MIRTK 2016

Introduction

The MIRTK is a research-focused image processing toolkit, developed at the BioMedIA research group. It provides a collection of libraries and command-line tools to assist in processing and analyzing imaging data. The main application of the MIRTK is in adult and neonatal brain MR image registration as well as the reconstruction of cortical surface meshes. The modular project organization of the MIRTK enables the installation of selected modules. ¹

Installed version(s)

This version is installed and currently available

on environment hpc-env/8.3:

MIRTK/2020.04/foss-2019b

Using MIRTK

To load the desired version of the module, use the command, e.g.

module load hpc-env 8.3
module load MIRTK 

Always remember: this command is case sensitive!

After loading the module, you can get an overview of the arguments and options of MIRTK by just typing:

mirtk

If you want to find out more about MIRTK on the HPC cluster, you can use the command

module spider MIRTK 

This will show you basic information e.g. a short description and the currently installed version.

Documentation

The full documentation can be found here.