Fiji/Unet 2016

Introduction

U-Net is a plugin for ImageJ. It is a generic deep-learning solution for frequently occurring quantificationtasks like cell detection and shape measurements in biomedical image data. In this case, Unet is built on Fiji, a distribution for ImageJ, specifically build to facilitate scientific image analysis. Unet works with and is dependent of a modified version of caffe: caffe_unet.

Installed version(s)

This version is installed and currently available on environment hpc-env/6.4:

Using XXXXXXXXXX

If you want to find out more about XXXXXXXXXXX on the HPC cluster, you can use the command

module spider XXXXXXXXXXXXX

This will show you basic informations e.g. a short description and the currently installed version.

To load the desired version of the module, use the command, e.g.

module load hpc-env 6.4
module load XXXXXXXXXXXXXXXXXx

Always remember: this command is case sensitive!

Documentation

The full documentation can be found [ here].