Gffread 2016

Introduction

gffread is a GFF/GTF parsing utility which provides format conversions, region filtering, FASTA sequence extraction and more.

Installed version

The currently installed version is available on the environment hpc-env/6.4:

gffread/0.9.12-foss-2017b

Using gffread

If you want to find out more about gffread on the HPC Cluster, you can use the command

module spider gffread

This will show you basic informations e.g. a short description and the currently installed version.

To load the desired version of the module, use the command, e.g.

module load hpc-env/6.4
module load gffread

Always remember: this command is case sensitive!

To get more information about how to specifically use the program, you can use the help funktion:

gffread --help

Documentation

For more information about gffread as well as about GFF and GTF files, you can visit this site.