BRAKER2 2016

Introduction

BRAKER2 is a combination of GeneMark-ET and AUGUSTUS, that uses genomic and RNA-Seq data to automatically generate full gene structure annotations in novel genomes.

GeneMark and AUGUSTS are independently installed as dependencies for BRAKER2.

Installed Version

BRAKER2/2.1.2 Installed on hpc-env/6.4

Using BRAKER2

In order to use BRAKER2 you primarily have to change into the newer environment:

module load hpc-env/6.4

module load BRAKER2

Please note that BRAKER2 runs with Python 3.7.0.

Documentation

To get a quick overview of the commands available for BRAKER2, just type braker.pl into the console after loading the module. You will then get a short summary of the commands for BRAKER2.

For further Information, visit the developers | website