Stacks
From HPC users
Introduction
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
Installed version
Using Stacks on the HPC cluster
Documentation
A manual for Stacks can be found here here.
