Installed Application Software and Libraries

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Introduction

This page was created to give you an overview of the installed software on the cluster. The list will be updated once per week.

/cm/local/modulefiles

  • cluster-tools/7.3
  • cmd
  • dot
  • freeipmi/1.5.2
  • gcc/6.1.0
  • ipmitool/1.8.17
  • module-git
  • module-info
  • openldap
  • shared

/cm/shared/uniol/modules/core

  • hpc-uniol-env (L)
  • slurm/current (L)

/cm/shared/uniol/modules/bio

  • BCFtools/1.3.1
  • bcl2fastq2/2.18.0.12
  • BEDTools/2.26.0
  • BLAST/2.2.26
  • BLAST/2.6.0 (D)
  • BLAT/3.5
  • BamTools/2.4.0
  • Beast/2.4.5
  • BioPerl/1.7.0
  • Biopython/1.68
  • Bowtie/1.1.2
  • Bowtie2/2.2.9
  • bwa.kit/0.7.12
  • CD-HIT/4.6.4
  • cutadapt/1.9.1
  • FASTX-Toolkit/0.0.14
  • FastQC/0.11.5
  • IGV/2.3.80
  • IGVTools/2.3.75
  • Lighter/1.0
  • Lumpy/0.1
  • NextGenMap/0.5.2
  • SAMtools/1.3.1
  • SOAPdenovo2/r240
  • Stacks/1.42
  • Trinity/2.2.0
  • VCFtools/0.1.14
  • ViennaRNA/2.3.1

/cm/shared/uniol/modules/cfd

  • ESMF/7.0.0
  • GMT/5.3.1
  • OpenFOAM/1.7.1
  • OpenFOAM/2.1.1
  • OpenFOAM/2.3.1
  • OpenFOAM/2.4.0
  • OpenFOAM/3.0.1
  • OpenFOAM/4.0
  • OpenFOAM/4.1-gcc
  • OpenFOAM/4.1-se
  • OpenFOAM/4.1 (D)
  • OpenFOAM-Extend/3.2
  • PALMDependencies/all
  • ThetaDependencies/all
  • WPS/3.6.1
  • WPS/3.7.1
  • WPS/3.8.0
  • WPS/3.8.1 (D)
  • WRF/3.6.1
  • WRF/3.7.1
  • WRF/3.8.0
  • WRF/3.8.1 (D)
  • WRFGeodata/all
  • WRFGeodata/3.8 (D)

/cm/shared/uniol/modules/chem

  • CP2K/3.0
  • ORCA/3.0.3
  • ORCA/4.0.0 (D)
  • PLUMED/2.2.3
  • gaussian/g09.b01
  • gaussian/g09.d01 (D)

/cm/shared/uniol/modules/compiler

  • CUDA-Toolkit/8.0.44
  • GCC/4.9.4-2.25
  • GCC/5.4.0-2.26
  • GCC/6.2.0-2.27 (D)
  • LLVM/3.8.1-goolf-5.2.01
  • LLVM/3.8.1-intel-2016b
  • LLVM/3.9.0-intel-2016b (D)
  • NAG_Fortran/5.2
  • PGI/12.10
  • PGI/15.10
  • PGI/16.10 (D)
  • icc/2016.3.210
  • ifort/2016.3.210

/cm/shared/uniol/modules/data

  • CDO/1.7.2-intel-2016b
  • HDF/4.2.11-intel-2016b
  • HDF5/1.8.17-intel-2016b
  • NCL/6.3.0-intel-2016b
  • g2clib/1.4.0-intel-2016b
  • g2lib/1.4.0-intel-2016b
  • grib_api/1.16.0-intel-2016b
  • netCDF/4.4.1-intel-2016b
  • netCDF-Fortran/4.4.4-intel-2016b

/cm/shared/uniol/modules/devel

  Autotools/20150215               CMake/2.8.12                CUDA-Visual-Profiler/8.0.44    Nvidia-Tesla-GDK/352.79    SQLite/3.9.2-intel-2016b          Scalasca/2.3       xbitmaps/1.1.1
  Boost/1.61.0-goolf-5.2.01        CMake/3.6.2          (D)    Cube/4.3.4                     OTF2/2.0                   SQLite/3.13.0-goolf-5.2.01        Valgrind/3.12.0    xorg-macros/1.19.0
  Boost/1.61.0-intel-2016b  (D)    CUDA-Profiler/8.0.44        M4/1.4.17                      Qt/4.8.7-goolf-5.2.01      SQLite/3.13.0-intel-2016b  (D)    ncurses/6.0

/cm/shared/uniol/modules/lang

  Anaconda3/4.3.0    Gurobi/7.0.2    Perl/5.20.3                  Python/2.7.12        R/3.3.1                                     Tcl/8.6.4-intel-2016b    nodejs/4.4.7-intel-2016b
  Bison/3.0.4        Java/8.112      Python/2.7.11-intel-2016b    Python/3.5.2  (D)    ScientificPython/2.9.4-Python-2.7.12 (D)    Yasm/1.3.0

/cm/shared/uniol/modules/lib

  CFITSIO/3.410       CUDA-FFT/8.0.44    Xerces-C++/3.1.3    libtool/2.4.6    path.py/8.2.1-intel-2016b-Python-3.5.2    xforms/1.2.4    zoltan/3.83
  CUDA-Blas/8.0.44    SIONlib/1.6.1      libpng/1.6.24       libxml2/2.9.4    testpath/0.3-intel-2016b-Python-3.5.2     zlib/1.2.8

/cm/shared/uniol/modules/math

  • GMP/6.1.0-intel-2016b

/cm/shared/uniol/modules/mpi

  • OpenMPI/1.10.4-GCC-4.9.4
  • OpenMPI/2.0.1-GCC-5.4.0
  • OpenMPI/2.0.1-GCC-6.2.0
  • OpenMPI/2.0.2-GCC-5.4.0-2.26 (D)
  • impi/5.1.3.210

/cm/shared/uniol/modules/numlib

  ATLAS/3.10.2         FFTW/3.3.5-gompi-5.2.01                     GSL/2.1         MATLAB/2016b    Octave/4.0.3       ScaLAPACK/2.0.2          imkl/11.3.3.210    maple/2016 (D)
  Armadillo/7.500.1    FIAT/1.6.0-intel-2016b-Python-2.7.12        Hypre/2.11.1    MPFR/3.1.4      OpenBLAS/0.2.19    SuiteSparse/4.5.3        leda/6.3           stata/13
  Eigen/3.2.9          GMP/6.1.1                            (D)    LinBox/1.4.0    NTL/9.8.1       Qhull/2015.2       cuDNN/5.1-CUDA-8.0.44    maple/18

/cm/shared/uniol/modules/phys

  • EGSnrc/2017
  • Geant4/9.6.p04-intel-2016b
  • Geant4/9.6.p04
  • Geant4/10.02.p01 (D)
  • fluka/2011.2c

/cm/shared/uniol/modules/toolchain

  • foss/2016b
  • gompi/4.1.10
  • gompi/5.2.01
  • gompi/6.2.01 (D)
  • goolf/5.2.01
  • iimpi/2013b
  • iimpi/2016b (D)
  • intel/2013b
  • intel/2016b (D)

/cm/shared/uniol/modules/tools

  • EasyBuild/3.0.0
  • Ghostscript/9.19-intel-2016b
  • NCO/4.6.0-intel-2016b
  • XZ/5.2.2-intel-2016b
  • configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7
  • tree/1.7.0
  • util-linux/2.29-intel-2016b

/cm/shared/uniol/modules/vis

  • FFmpeg/3.1.3-intel-2016b
  • GraphicsMagick/1.3.25-intel-2016b
  • OpenCV/3.1.0-intel-2016b
  • ParaView/5.1.2-goolf-5.2.01-mpi
  • ParaView/5.1.2-intel-2016b-mpi (D)
  • Tk/8.6.4-intel-2016b-no-X11
  • UDUNITS/2.2.20-intel-2016b
  • gettext/0.19.8
  • gnuplot/5.0.5-intel-2016b
  • grace/5.1.25
  • libX11/1.6.3-intel-2016b
  • motif/2.3.6
  • ncview/2.1.7-intel-2016b


The list above was created with the command: 

module avail

and will is not showing the hidden modules.

If you want to create a list of every available software on the cluster (even the hidden ones), on your own, you can do this by simply using the command: 

module spider

The available software is listed in the format: name, version

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