IGV and IGVTools
From HPC users
Introduction
The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations.
The IGVTools utility provides a set of tools for pre-processing data files. File names must contain an accepted file extension, e.g. test-xyz.bam. Tools include:
- toTDF
- count
- index
- sort
Installed version
The following versions are installed and currently available...
... on environment hpc-env/8.3:
- IGV/2.3.80
- IGV/2.11.1-Java-11
- IGVTools/2.3.75
- IGVTools/2.4.19-Java-11
... on environment hpc-env/6.4':
- IGV/2.3.80
- IGV/2.11.1-Java-11
- IGVTools/2.3.75
- IGVTools/2.4.19-Java-11
... on environment hpc-uniol-env:
- IGV/2.3.80
- IGV/2.11.1-Java-11
- IGVTools/2.3.75
- IGVTools/2.4.19-Java-11
Documentation
The full documentation of IGV and IGVTools can be found here.
