BRAKER2 2016
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Introduction
BRAKER2 is a combination of GeneMark-ET and AUGUSTUS, that uses genomic and RNA-Seq data to automatically generate full gene structure annotations in novel genomes.
GeneMark and AUGUSTS are independently installed as dependencies for BRAKER2.
Installed Version
BRAKER2/2.1.2 Installed on hpc-env/6.4
Using BRAKER2
In order to use BRAKER2 you primarily have to change into the newer environment:
module load hpc-env/6.4
module load BRAKER2
Documentation
To get a quick overview of the commands available for BRAKER2, just type braker.pl into the console after loading the module. You will then get a short summary of the commands for BRAKER2.
For further Information, visit the developers website
