GATK

Introduction

The GATK toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

Installed version

The currently installed version of GATK is 3.7 and its based on Java in version 1.8.0_112 (renamed to "8.112" on the cluster).

Documentation

The GATK Documentation can be found here.