Installed Application Software and Libraries

Introduction

This page was created to give you an overview of the installed software on the cluster. The list will be updated once per week.

/cm/local/modulefiles

cluster-tools/7.3
cmd
dot
freeipmi/1.5.2
gcc/6.1.0
ipmitool/1.8.17
module-git
module-info
openldap
shared

/cm/shared/uniol/modules/core

hpc-uniol-env (L)
slurm/current (L)

/cm/shared/uniol/modules/bio

BCFtools/1.3.1
bcl2fastq2/2.18.0.12
BEDTools/2.26.0
BLAST/2.2.26
BLAST/2.6.0 (D)
BLAT/3.5
BamTools/2.4.0
Beast/2.4.5
BioPerl/1.7.0
Biopython/1.68
Bowtie/1.1.2
Bowtie2/2.2.9
bwa.kit/0.7.12
CD-HIT/4.6.4
cutadapt/1.9.1
FASTX-Toolkit/0.0.14
FastQC/0.11.5
IGV/2.3.80
IGVTools/2.3.75
Lighter/1.0
Lumpy/0.1
NextGenMap/0.5.2
SAMtools/1.3.1
SOAPdenovo2/r240
Stacks/1.42
Trinity/2.2.0
VCFtools/0.1.14
ViennaRNA/2.3.1

/cm/shared/uniol/modules/cfd

ESMF/7.0.0
GMT/5.3.1
OpenFOAM/1.7.1
OpenFOAM/2.1.1
OpenFOAM/2.3.1
OpenFOAM/2.4.0
OpenFOAM/3.0.1
OpenFOAM/4.0
OpenFOAM/4.1-gcc
OpenFOAM/4.1-se
OpenFOAM/4.1 (D)
OpenFOAM-Extend/3.2
PALMDependencies/all
ThetaDependencies/all
WPS/3.6.1
WPS/3.7.1
WPS/3.8.0
WPS/3.8.1 (D)
WRF/3.6.1
WRF/3.7.1
WRF/3.8.0
WRF/3.8.1 (D)
WRFGeodata/all
WRFGeodata/3.8 (D)

/cm/shared/uniol/modules/chem

CP2K/3.0
ORCA/3.0.3
ORCA/4.0.0 (D)
PLUMED/2.2.3
gaussian/g09.b01
gaussian/g09.d01 (D)

/cm/shared/uniol/modules/compiler

CUDA-Toolkit/8.0.44
GCC/4.9.4-2.25
GCC/5.4.0-2.26
GCC/6.2.0-2.27 (D)
LLVM/3.8.1-goolf-5.2.01
LLVM/3.8.1-intel-2016b
LLVM/3.9.0-intel-2016b (D)
NAG_Fortran/5.2
PGI/12.10
PGI/15.10
PGI/16.10 (D)
icc/2016.3.210
ifort/2016.3.210

/cm/shared/uniol/modules/data

CDO/1.7.2-intel-2016b
HDF/4.2.11-intel-2016b
HDF5/1.8.17-intel-2016b
NCL/6.3.0-intel-2016b
g2clib/1.4.0-intel-2016b
g2lib/1.4.0-intel-2016b
grib_api/1.16.0-intel-2016b
netCDF/4.4.1-intel-2016b
netCDF-Fortran/4.4.4-intel-2016b

/cm/shared/uniol/modules/devel

Autotools/20150215
Boost/1.61.0-goolf-5.2.01
Boost/1.61.0-intel-2016b (D)
CMake/2.8.12
CMake/3.6.2 (D)
CUDA-Profiler/8.0.44
CUDA-Visual-Profiler/8.0.44
Cube/4.3.4
M4/1.4.17
ncurses/6.0
Nvidia-Tesla-GDK/352.79
OTF2/2.0
Qt/4.8.7-goolf-5.2.01
SQLite/3.9.2-intel-2016b
SQLite/3.13.0-goolf-5.2.01
SQLite/3.13.0-intel-2016b (D)
Scalasca/2.3
Valgrind/3.12.0
xbitmaps/1.1.1
xorg-macros/1.19.0

/cm/shared/uniol/modules/lang

Anaconda3/4.3.0
Bison/3.0.4
Gurobi/7.0.2
Java/8.112
nodejs/4.4.7-intel-2016b
Perl/5.20.3
Python/2.7.11-intel-2016b
Python/2.7.12
Python/3.5.2 (D)
R/3.3.1
ScientificPython/2.9.4-Python-2.7.12 (D)
Tcl/8.6.4-intel-2016b
Yasm/1.3.0

/cm/shared/uniol/modules/lib

CFITSIO/3.410
CUDA-Blas/8.0.44
CUDA-FFT/8.0.44
libtool/2.4.6
libpng/1.6.24
libxml2/2.9.4
path.py/8.2.1-intel-2016b-Python-3.5.2
SIONlib/1.6.1
testpath/0.3-intel-2016b-Python-3.5.2
Xerces-C++/3.1.3
xforms/1.2.4
zlib/1.2.8
zoltan/3.83

/cm/shared/uniol/modules/math

GMP/6.1.0-intel-2016b

/cm/shared/uniol/modules/mpi

OpenMPI/1.10.4-GCC-4.9.4
OpenMPI/2.0.1-GCC-5.4.0
OpenMPI/2.0.1-GCC-6.2.0
OpenMPI/2.0.2-GCC-5.4.0-2.26 (D)
impi/5.1.3.210

/cm/shared/uniol/modules/numlib

  ATLAS/3.10.2         FFTW/3.3.5-gompi-5.2.01                     GSL/2.1         MATLAB/2016b    Octave/4.0.3       ScaLAPACK/2.0.2          imkl/11.3.3.210    maple/2016 (D)
  Armadillo/7.500.1    FIAT/1.6.0-intel-2016b-Python-2.7.12        Hypre/2.11.1    MPFR/3.1.4      OpenBLAS/0.2.19    SuiteSparse/4.5.3        leda/6.3           stata/13
  Eigen/3.2.9          GMP/6.1.1                            (D)    LinBox/1.4.0    NTL/9.8.1       Qhull/2015.2       cuDNN/5.1-CUDA-8.0.44    maple/18

/cm/shared/uniol/modules/phys

EGSnrc/2017
Geant4/9.6.p04-intel-2016b
Geant4/9.6.p04
Geant4/10.02.p01 (D)
fluka/2011.2c

/cm/shared/uniol/modules/toolchain

foss/2016b
gompi/4.1.10
gompi/5.2.01
gompi/6.2.01 (D)
goolf/5.2.01
iimpi/2013b
iimpi/2016b (D)
intel/2013b
intel/2016b (D)

/cm/shared/uniol/modules/tools

EasyBuild/3.0.0
Ghostscript/9.19-intel-2016b
NCO/4.6.0-intel-2016b
XZ/5.2.2-intel-2016b
configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7
tree/1.7.0
util-linux/2.29-intel-2016b

/cm/shared/uniol/modules/vis

FFmpeg/3.1.3-intel-2016b
GraphicsMagick/1.3.25-intel-2016b
OpenCV/3.1.0-intel-2016b
ParaView/5.1.2-goolf-5.2.01-mpi
ParaView/5.1.2-intel-2016b-mpi (D)
Tk/8.6.4-intel-2016b-no-X11
UDUNITS/2.2.20-intel-2016b
gettext/0.19.8
gnuplot/5.0.5-intel-2016b
grace/5.1.25
libX11/1.6.3-intel-2016b
motif/2.3.6
ncview/2.1.7-intel-2016b

The list above was created with the command:

module avail

and will is not showing the hidden modules.

If you want to create a list of every available software on the cluster (even the hidden ones), on your own, you can do this by simply using the command:

module spider

The available software is listed in the format: name, version