Installed Application Software and Libraries
From HPC users
Introduction
This page was created to give you an overview of the installed software on the cluster. The list will be updated once per week.
/cm/local/modulefiles
- cluster-tools/7.3
- cmd
- dot
- freeipmi/1.5.2
- gcc/6.1.0
- ipmitool/1.8.17
- module-git
- module-info
- openldap
- shared
- hpc-uniol-env (L)
- slurm/current (L)
BCFtools/1.3.1 BLAST/2.6.0 (D) Beast/2.4.5 Bowtie/1.1.2 FASTX-Toolkit/0.0.14 IGVTools/2.3.75 NextGenMap/0.5.2 Stacks/1.42 ViennaRNA/2.3.1 cutadapt/1.9.1 BEDTools/2.26.0 BLAT/3.5 BioPerl/1.7.0 Bowtie2/2.2.9 FastQC/0.11.5 Lighter/1.0 SAMtools/1.3.1 Trinity/2.2.0 bcl2fastq2/2.18.0.12 BLAST/2.2.26 BamTools/2.4.0 Biopython/1.68 CD-HIT/4.6.4 IGV/2.3.80 Lumpy/0.1 SOAPdenovo2/r240 VCFtools/0.1.14 bwa.kit/0.7.12
ESMF/7.0.0 OpenFOAM/2.1.1 OpenFOAM/3.0.1 OpenFOAM/4.1-se PALMDependencies/all WPS/3.7.1 WRF/3.6.1 WRF/3.8.1 (D) GMT/5.3.1 OpenFOAM/2.3.1 OpenFOAM/4.0 OpenFOAM/4.1 (D) ThetaDependencies/all WPS/3.8.0 WRF/3.7.1 WRFGeodata/all OpenFOAM/1.7.1 OpenFOAM/2.4.0 OpenFOAM/4.1-gcc OpenFOAM-Extend/3.2 WPS/3.6.1 WPS/3.8.1 (D) WRF/3.8.0 WRFGeodata/3.8 (D)
CP2K/3.0 ORCA/3.0.3 ORCA/4.0.0 (D) PLUMED/2.2.3 gaussian/g09.b01 gaussian/g09.d01 (D)
CUDA-Toolkit/8.0.44 GCC/5.4.0-2.26 LLVM/3.8.1-goolf-5.2.01 LLVM/3.9.0-intel-2016b (D) PGI/12.10 PGI/16.10 (D) ifort/2016.3.210 GCC/4.9.4-2.25 GCC/6.2.0-2.27 (D) LLVM/3.8.1-intel-2016b NAG_Fortran/5.2 PGI/15.10 icc/2016.3.210
CDO/1.7.2-intel-2016b HDF5/1.8.17-intel-2016b g2clib/1.4.0-intel-2016b grib_api/1.16.0-intel-2016b netCDF-Fortran/4.4.4-intel-2016b HDF/4.2.11-intel-2016b NCL/6.3.0-intel-2016b g2lib/1.4.0-intel-2016b netCDF/4.4.1-intel-2016b
Autotools/20150215 CMake/2.8.12 CUDA-Visual-Profiler/8.0.44 Nvidia-Tesla-GDK/352.79 SQLite/3.9.2-intel-2016b Scalasca/2.3 xbitmaps/1.1.1 Boost/1.61.0-goolf-5.2.01 CMake/3.6.2 (D) Cube/4.3.4 OTF2/2.0 SQLite/3.13.0-goolf-5.2.01 Valgrind/3.12.0 xorg-macros/1.19.0 Boost/1.61.0-intel-2016b (D) CUDA-Profiler/8.0.44 M4/1.4.17 Qt/4.8.7-goolf-5.2.01 SQLite/3.13.0-intel-2016b (D) ncurses/6.0
Anaconda3/4.3.0 Gurobi/7.0.2 Perl/5.20.3 Python/2.7.12 R/3.3.1 Tcl/8.6.4-intel-2016b nodejs/4.4.7-intel-2016b Bison/3.0.4 Java/8.112 Python/2.7.11-intel-2016b Python/3.5.2 (D) ScientificPython/2.9.4-Python-2.7.12 (D) Yasm/1.3.0
CFITSIO/3.410 CUDA-FFT/8.0.44 Xerces-C++/3.1.3 libtool/2.4.6 path.py/8.2.1-intel-2016b-Python-3.5.2 xforms/1.2.4 zoltan/3.83 CUDA-Blas/8.0.44 SIONlib/1.6.1 libpng/1.6.24 libxml2/2.9.4 testpath/0.3-intel-2016b-Python-3.5.2 zlib/1.2.8
GMP/6.1.0-intel-2016b
OpenMPI/1.10.4-GCC-4.9.4 OpenMPI/2.0.1-GCC-5.4.0 OpenMPI/2.0.1-GCC-6.2.0 OpenMPI/2.0.2-GCC-5.4.0-2.26 (D) impi/5.1.3.210
ATLAS/3.10.2 FFTW/3.3.5-gompi-5.2.01 GSL/2.1 MATLAB/2016b Octave/4.0.3 ScaLAPACK/2.0.2 imkl/11.3.3.210 maple/2016 (D) Armadillo/7.500.1 FIAT/1.6.0-intel-2016b-Python-2.7.12 Hypre/2.11.1 MPFR/3.1.4 OpenBLAS/0.2.19 SuiteSparse/4.5.3 leda/6.3 stata/13 Eigen/3.2.9 GMP/6.1.1 (D) LinBox/1.4.0 NTL/9.8.1 Qhull/2015.2 cuDNN/5.1-CUDA-8.0.44 maple/18
EGSnrc/2017 Geant4/9.6.p04-intel-2016b Geant4/9.6.p04 Geant4/10.02.p01 (D) fluka/2011.2c
foss/2016b gompi/4.1.10 gompi/5.2.01 gompi/6.2.01 (D) goolf/5.2.01 iimpi/2013b iimpi/2016b (D) intel/2013b intel/2016b (D)
EasyBuild/3.0.0 Ghostscript/9.19-intel-2016b NCO/4.6.0-intel-2016b XZ/5.2.2-intel-2016b configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7 tree/1.7.0 util-linux/2.29-intel-2016b
FFmpeg/3.1.3-intel-2016b ParaView/5.1.2-goolf-5.2.01-mpi UDUNITS/2.2.20-intel-2016b grace/5.1.25 ncview/2.1.7-intel-2016b GraphicsMagick/1.3.25-intel-2016b ParaView/5.1.2-intel-2016b-mpi (D) gettext/0.19.8 libX11/1.6.3-intel-2016b OpenCV/3.1.0-intel-2016b Tk/8.6.4-intel-2016b-no-X11 gnuplot/5.0.5-intel-2016b motif/2.3.6
This list was created with the command:
module avail
and will is not showing the hidden modules.
If you want to create a list of every available software on the cluster (even the hidden ones), on your own, you can do this by simply using the command:
module spider
The available software is listed in the format: name, version
