ConnectomeWorkbench 2016

Introduction

Connectome Workbench is an open source, freely available visualization and discovery tool used to map neuroimaging data, especially data generated by the Human Connectome Project. The distribution includes wb_view, a GUI-based visualiation platform, and wb_command, a command-line program for performing a variety of algorithmic tasks using volume, surface, and grayordinate data. wb_command is necessary for running HCP data processing pipelines. ¹

Installed version(s)

This version is installed and currently available on environment hpc-env/8.3:

ConnectomeWorkbench/1.3.2-GCCcore-8.3.0

Using ConnectomeWorkbench

To load the desired version of the module, use the command, e.g.

module load hpc-env 6.4
module load ConnectomeWorkbench

Always remember: this command is case sensitive!

After Loading the Module, you have three applications available, which you can use by just typing them into the console:

wb_command
wb_shortcuts
wb_view

Without any command, each of them will give you a short description on how to use them.

If you want to find out more about ConnectomeWorkbenchon the HPC cluster, you can use the command

module spider ConnectomeWorkbench

This will show you basic information e.g. a short description and the currently installed version.

Documentation

The full documentation can be downloaded as pdf here.