Difference between revisions of "BBMap 2016"
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You will see a list of callable shell scripts (*.sh). | You will see a list of callable shell scripts (*.sh). | ||
For example you | For example you will find ''bbmap.sh''. <br/> | ||
By just calling ''bbmap.sh'' you will get more information about the script. <br/> | |||
If you want to find out more about BBMap on the HPC Cluster, you can use the command | If you want to find out more about BBMap on the HPC Cluster, you can use the command | ||
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Always remember: this command is case sensitive! | Always remember: this command is case sensitive! | ||
== Documentation == | == Documentation == | ||
The full documentation can be found [https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/bbmap-guide/ here]. | The full documentation can be found [https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/bbmap-guide/ here]. | ||
Revision as of 14:26, 14 August 2019
Introduction
Installed version(s)
This version is installed and currently available on environment hpc-env/6.4:
BBMap/38.61b-foss-2017b
Using BBMap
BBMap is a set of different tools. If ypu want to know, which tools are installed and usable, just load the module as shown above and type in:
ll $EBROOTBBMAP
You will see a list of callable shell scripts (*.sh).
For example you will find bbmap.sh.
By just calling bbmap.sh you will get more information about the script.
If you want to find out more about BBMap on the HPC Cluster, you can use the command
module spider BBMap
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env 6.4 module load BBMap
Always remember: this command is case sensitive!
Documentation
The full documentation can be found here.
