Difference between revisions of "Installed Application Software and Libraries"
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| Line 32: | Line 32: | ||
*[[Bowtie 1/Bowtie 2|Bowtie]]/1.1.2 | *[[Bowtie 1/Bowtie 2|Bowtie]]/1.1.2 | ||
*[[Bowtie 1/Bowtie 2|Bowtie2]]/2.2.9 | *[[Bowtie 1/Bowtie 2|Bowtie2]]/2.2.9 | ||
*bwa.kit/0.7.12 | *[[Burrows-Wheeler Aligner|bwa.kit]]/0.7.12 | ||
*[[CD-HIT]]/4.6.4 | *[[CD-HIT]]/4.6.4 | ||
*[[cutadapt]]/1.9.1 | *[[cutadapt]]/1.9.1 | ||
| Line 42: | Line 42: | ||
*Lumpy/0.1 | *Lumpy/0.1 | ||
*NextGenMap/0.5.2 | *NextGenMap/0.5.2 | ||
*SAMtools/1.3.1 | *[[SAMtools]]/1.3.1 | ||
*SOAPdenovo2/r240 | *[[SOAPdenovo2]]/r240 | ||
*Stacks/1.42 | *Stacks/1.42 | ||
*Trinity/2.2.0 | *Trinity/2.2.0 | ||
Revision as of 08:28, 28 March 2017
Introduction
This page was created to give you an overview of the installed software (format: name/version) on the cluster. The list will be updated at least once per week.
/cm/local/modulefiles
- cluster-tools/7.3
- cmd
- dot
- freeipmi/1.5.2
- gcc/6.1.0
- ipmitool/1.8.17
- module-git
- module-info
- openldap
- shared
- hpc-uniol-env (L)
- slurm/current (L)
- BCFtools/1.3.1
- bcl2fastq2/2.18.0.12
- BEDTools/2.26.0
- BLAST/2.2.26
- BLAST/2.6.0 (D)
- BLAT/3.5
- BamTools/2.4.0
- Beast/2.4.5
- BioPerl/1.7.0
- Biopython/1.68
- Bowtie/1.1.2
- Bowtie2/2.2.9
- bwa.kit/0.7.12
- CD-HIT/4.6.4
- cutadapt/1.9.1
- FASTX-Toolkit/0.0.14
- FastQC/0.11.5
- IGV/2.3.80
- IGVTools/2.3.75
- Lighter/1.0
- Lumpy/0.1
- NextGenMap/0.5.2
- SAMtools/1.3.1
- SOAPdenovo2/r240
- Stacks/1.42
- Trinity/2.2.0
- VCFtools/0.1.14
- ViennaRNA/2.3.1
- ESMF/7.0.0
- GMT/5.3.1
- OpenFOAM/1.7.1
- OpenFOAM/2.1.1
- OpenFOAM/2.3.1
- OpenFOAM/2.4.0
- OpenFOAM/3.0.1
- OpenFOAM/4.0
- OpenFOAM/4.1-gcc
- OpenFOAM/4.1-se
- OpenFOAM/4.1 (D)
- OpenFOAM-Extend/3.2
- PALMDependencies/all
- ThetaDependencies/all
- WPS/3.6.1
- WPS/3.7.1
- WPS/3.8.0
- WPS/3.8.1 (D)
- WRF/3.6.1
- WRF/3.7.1
- WRF/3.8.0
- WRF/3.8.1 (D)
- WRFGeodata/all
- WRFGeodata/3.8 (D)
- CP2K/3.0
- ORCA/3.0.3
- ORCA/4.0.0 (D)
- PLUMED/2.2.3
- gaussian/g09.b01
- gaussian/g09.d01 (D)
- CUDA-Toolkit/8.0.44
- GCC/4.9.4-2.25
- GCC/5.4.0-2.26
- GCC/6.2.0-2.27 (D)
- LLVM/3.8.1-goolf-5.2.01
- LLVM/3.8.1-intel-2016b
- LLVM/3.9.0-intel-2016b (D)
- NAG_Fortran/5.2
- PGI/12.10
- PGI/15.10
- PGI/16.10 (D)
- icc/2016.3.210
- ifort/2016.3.210
- CDO/1.7.2-intel-2016b
- HDF/4.2.11-intel-2016b
- HDF5/1.8.17-intel-2016b
- NCL/6.3.0-intel-2016b
- g2clib/1.4.0-intel-2016b
- g2lib/1.4.0-intel-2016b
- grib_api/1.16.0-intel-2016b
- netCDF/4.4.1-intel-2016b
- netCDF-Fortran/4.4.4-intel-2016b
- Autotools/20150215
- Boost/1.61.0-goolf-5.2.01
- Boost/1.61.0-intel-2016b (D)
- CMake/2.8.12
- CMake/3.6.2 (D)
- CUDA-Profiler/8.0.44
- CUDA-Visual-Profiler/8.0.44
- Cube/4.3.4
- M4/1.4.17
- ncurses/6.0
- Nvidia-Tesla-GDK/352.79
- OTF2/2.0
- Qt/4.8.7-goolf-5.2.01
- SQLite/3.9.2-intel-2016b
- SQLite/3.13.0-goolf-5.2.01
- SQLite/3.13.0-intel-2016b (D)
- Scalasca/2.3
- Valgrind/3.12.0
- xbitmaps/1.1.1
- xorg-macros/1.19.0
- Anaconda3/4.3.0
- Bison/3.0.4
- Gurobi/7.0.2
- Java/8.112
- nodejs/4.4.7-intel-2016b
- Perl/5.20.3
- Python/2.7.11-intel-2016b
- Python/2.7.12
- Python/3.5.2 (D)
- R/3.3.1
- ScientificPython/2.9.4-Python-2.7.12 (D)
- Tcl/8.6.4-intel-2016b
- Yasm/1.3.0
- CFITSIO/3.410
- CUDA-Blas/8.0.44
- CUDA-FFT/8.0.44
- libtool/2.4.6
- libpng/1.6.24
- libxml2/2.9.4
- path.py/8.2.1-intel-2016b-Python-3.5.2
- SIONlib/1.6.1
- testpath/0.3-intel-2016b-Python-3.5.2
- Xerces-C++/3.1.3
- xforms/1.2.4
- zlib/1.2.8
- zoltan/3.83
- GMP/6.1.0-intel-2016b
- OpenMPI/1.10.4-GCC-4.9.4
- OpenMPI/2.0.1-GCC-5.4.0
- OpenMPI/2.0.1-GCC-6.2.0
- OpenMPI/2.0.2-GCC-5.4.0-2.26 (D)
- impi/5.1.3.210
- ATLAS/3.10.2
- Armadillo/7.500.1
- cuDNN/5.1-CUDA-8.0.44
- Eigen/3.2.9
- FFTW/3.3.5-gompi-5.2.01
- FIAT/1.6.0-intel-2016b-Python-2.7.12
- GMP/6.1.1 (D)
- GSL/2.1
- Hypre/2.11.1
- imkl/11.3.3.210
- leda/6.3
- LinBox/1.4.0
- maple/18
- MATLAB/2016b
- maple/2016 (D)
- MPFR/3.1.4
- NTL/9.8.1
- Octave/4.0.3
- OpenBLAS/0.2.19
- Qhull/2015.2
- ScaLAPACK/2.0.2
- SuiteSparse/4.5.3
- stata/13
- EGSnrc/2017
- Geant4/9.6.p04-intel-2016b
- Geant4/9.6.p04
- Geant4/10.02.p01 (D)
- fluka/2011.2c
- foss/2016b
- gompi/4.1.10
- gompi/5.2.01
- gompi/6.2.01 (D)
- goolf/5.2.01
- iimpi/2013b
- iimpi/2016b (D)
- intel/2013b
- intel/2016b (D)
- EasyBuild/3.0.0
- Ghostscript/9.19-intel-2016b
- NCO/4.6.0-intel-2016b
- XZ/5.2.2-intel-2016b
- configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7
- tree/1.7.0
- util-linux/2.29-intel-2016b
- FFmpeg/3.1.3-intel-2016b
- GraphicsMagick/1.3.25-intel-2016b
- OpenCV/3.1.0-intel-2016b
- ParaView/5.1.2-goolf-5.2.01-mpi
- ParaView/5.1.2-intel-2016b-mpi (D)
- Tk/8.6.4-intel-2016b-no-X11
- UDUNITS/2.2.20-intel-2016b
- gettext/0.19.8
- gnuplot/5.0.5-intel-2016b
- grace/5.1.25
- libX11/1.6.3-intel-2016b
- motif/2.3.6
- ncview/2.1.7-intel-2016b
The list above was created with the command:
module avail
and will is not showing the hidden modules.
If you want to create a list of every available software on the cluster (even the hidden ones), on your own, you can do this by simply using the command:
module spider
The available software is listed in the format: name, version
