Difference between revisions of "Installed Application Software and Libraries"

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===/cm/shared/uniol/modules/bio===
===/cm/shared/uniol/modules/bio===
BCFtools/1.3.1     BLAST/2.6.0   (D)    Beast/2.4.5      Bowtie/1.1.2     FASTX-Toolkit/0.0.14    IGVTools/2.3.75   NextGenMap/0.5.2    Stacks/1.42        ViennaRNA/2.3.1        cutadapt/1.9.1
*BCFtools/1.3.1        
BEDTools/2.26.0   BLAT/3.5              BioPerl/1.7.0    Bowtie2/2.2.9   FastQC/0.11.5          Lighter/1.0        SAMtools/1.3.1     Trinity/2.2.0     bcl2fastq2/2.18.0.12
*bcl2fastq2/2.18.0.12                                         
BLAST/2.2.26      BamTools/2.4.0       Biopython/1.68    CD-HIT/4.6.4    IGV/2.3.80              Lumpy/0.1         SOAPdenovo2/r240   VCFtools/0.1.14   bwa.kit/0.7.12
*BEDTools/2.26.0                                                     
*BLAST/2.2.26                                                   
*BLAST/2.6.0   (D)
*BLAT/3.5
*BamTools/2.4.0
*Beast/2.4.5
*BioPerl/1.7.0  
*Biopython/1.68
*Bowtie/1.1.2
*Bowtie2/2.2.9  
*bwa.kit/0.7.12
*CD-HIT/4.6.4
*cutadapt/1.9.1
*FASTX-Toolkit/0.0.14
*FastQC/0.11.5
*IGV/2.3.80
*IGVTools/2.3.75
*Lighter/1.0
*Lumpy/0.1  
*NextGenMap/0.5.2
*SAMtools/1.3.1  
*SOAPdenovo2/r240
*Stacks/1.42
*Trinity/2.2.0
*VCFtools/0.1.14
*ViennaRNA/2.3.1


===/cm/shared/uniol/modules/cfd===
===/cm/shared/uniol/modules/cfd===

Revision as of 14:18, 27 March 2017

Introduction

This page was created to give you an overview of the installed software on the cluster. The list will be updated once per week.

/cm/local/modulefiles

  • cluster-tools/7.3
  • cmd
  • dot
  • freeipmi/1.5.2
  • gcc/6.1.0
  • ipmitool/1.8.17
  • module-git
  • module-info
  • openldap
  • shared

/cm/shared/uniol/modules/core

  • hpc-uniol-env (L)
  • slurm/current (L)

/cm/shared/uniol/modules/bio

  • BCFtools/1.3.1
  • bcl2fastq2/2.18.0.12
  • BEDTools/2.26.0
  • BLAST/2.2.26
  • BLAST/2.6.0 (D)
  • BLAT/3.5
  • BamTools/2.4.0
  • Beast/2.4.5
  • BioPerl/1.7.0
  • Biopython/1.68
  • Bowtie/1.1.2
  • Bowtie2/2.2.9
  • bwa.kit/0.7.12
  • CD-HIT/4.6.4
  • cutadapt/1.9.1
  • FASTX-Toolkit/0.0.14
  • FastQC/0.11.5
  • IGV/2.3.80
  • IGVTools/2.3.75
  • Lighter/1.0
  • Lumpy/0.1
  • NextGenMap/0.5.2
  • SAMtools/1.3.1
  • SOAPdenovo2/r240
  • Stacks/1.42
  • Trinity/2.2.0
  • VCFtools/0.1.14
  • ViennaRNA/2.3.1

/cm/shared/uniol/modules/cfd

  ESMF/7.0.0        OpenFOAM/2.1.1    OpenFOAM/3.0.1      OpenFOAM/4.1-se            PALMDependencies/all     WPS/3.7.1        WRF/3.6.1    WRF/3.8.1      (D)
  GMT/5.3.1         OpenFOAM/2.3.1    OpenFOAM/4.0        OpenFOAM/4.1        (D)    ThetaDependencies/all    WPS/3.8.0        WRF/3.7.1    WRFGeodata/all
  OpenFOAM/1.7.1    OpenFOAM/2.4.0    OpenFOAM/4.1-gcc    OpenFOAM-Extend/3.2        WPS/3.6.1                WPS/3.8.1 (D)    WRF/3.8.0    WRFGeodata/3.8 (D)

/cm/shared/uniol/modules/chem

  CP2K/3.0    ORCA/3.0.3    ORCA/4.0.0 (D)    PLUMED/2.2.3    gaussian/g09.b01    gaussian/g09.d01 (D)

/cm/shared/uniol/modules/compiler

  CUDA-Toolkit/8.0.44    GCC/5.4.0-2.26        LLVM/3.8.1-goolf-5.2.01    LLVM/3.9.0-intel-2016b (D)    PGI/12.10    PGI/16.10      (D)    ifort/2016.3.210
  GCC/4.9.4-2.25         GCC/6.2.0-2.27 (D)    LLVM/3.8.1-intel-2016b     NAG_Fortran/5.2               PGI/15.10    icc/2016.3.210

/cm/shared/uniol/modules/data

  CDO/1.7.2-intel-2016b     HDF5/1.8.17-intel-2016b    g2clib/1.4.0-intel-2016b    grib_api/1.16.0-intel-2016b    netCDF-Fortran/4.4.4-intel-2016b
  HDF/4.2.11-intel-2016b    NCL/6.3.0-intel-2016b      g2lib/1.4.0-intel-2016b     netCDF/4.4.1-intel-2016b

/cm/shared/uniol/modules/devel

  Autotools/20150215               CMake/2.8.12                CUDA-Visual-Profiler/8.0.44    Nvidia-Tesla-GDK/352.79    SQLite/3.9.2-intel-2016b          Scalasca/2.3       xbitmaps/1.1.1
  Boost/1.61.0-goolf-5.2.01        CMake/3.6.2          (D)    Cube/4.3.4                     OTF2/2.0                   SQLite/3.13.0-goolf-5.2.01        Valgrind/3.12.0    xorg-macros/1.19.0
  Boost/1.61.0-intel-2016b  (D)    CUDA-Profiler/8.0.44        M4/1.4.17                      Qt/4.8.7-goolf-5.2.01      SQLite/3.13.0-intel-2016b  (D)    ncurses/6.0

/cm/shared/uniol/modules/lang

  Anaconda3/4.3.0    Gurobi/7.0.2    Perl/5.20.3                  Python/2.7.12        R/3.3.1                                     Tcl/8.6.4-intel-2016b    nodejs/4.4.7-intel-2016b
  Bison/3.0.4        Java/8.112      Python/2.7.11-intel-2016b    Python/3.5.2  (D)    ScientificPython/2.9.4-Python-2.7.12 (D)    Yasm/1.3.0

/cm/shared/uniol/modules/lib

  CFITSIO/3.410       CUDA-FFT/8.0.44    Xerces-C++/3.1.3    libtool/2.4.6    path.py/8.2.1-intel-2016b-Python-3.5.2    xforms/1.2.4    zoltan/3.83
  CUDA-Blas/8.0.44    SIONlib/1.6.1      libpng/1.6.24       libxml2/2.9.4    testpath/0.3-intel-2016b-Python-3.5.2     zlib/1.2.8

/cm/shared/uniol/modules/math

  GMP/6.1.0-intel-2016b

/cm/shared/uniol/modules/mpi

  OpenMPI/1.10.4-GCC-4.9.4    OpenMPI/2.0.1-GCC-5.4.0    OpenMPI/2.0.1-GCC-6.2.0    OpenMPI/2.0.2-GCC-5.4.0-2.26 (D)    impi/5.1.3.210

/cm/shared/uniol/modules/numlib

  ATLAS/3.10.2         FFTW/3.3.5-gompi-5.2.01                     GSL/2.1         MATLAB/2016b    Octave/4.0.3       ScaLAPACK/2.0.2          imkl/11.3.3.210    maple/2016 (D)
  Armadillo/7.500.1    FIAT/1.6.0-intel-2016b-Python-2.7.12        Hypre/2.11.1    MPFR/3.1.4      OpenBLAS/0.2.19    SuiteSparse/4.5.3        leda/6.3           stata/13
  Eigen/3.2.9          GMP/6.1.1                            (D)    LinBox/1.4.0    NTL/9.8.1       Qhull/2015.2       cuDNN/5.1-CUDA-8.0.44    maple/18

/cm/shared/uniol/modules/phys

  EGSnrc/2017    Geant4/9.6.p04-intel-2016b    Geant4/9.6.p04    Geant4/10.02.p01 (D)    fluka/2011.2c

/cm/shared/uniol/modules/toolchain

  foss/2016b    gompi/4.1.10    gompi/5.2.01    gompi/6.2.01 (D)    goolf/5.2.01    iimpi/2013b    iimpi/2016b (D)    intel/2013b    intel/2016b (D)

/cm/shared/uniol/modules/tools

  EasyBuild/3.0.0    Ghostscript/9.19-intel-2016b    NCO/4.6.0-intel-2016b    XZ/5.2.2-intel-2016b    configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7    tree/1.7.0    util-linux/2.29-intel-2016b

/cm/shared/uniol/modules/vis

  FFmpeg/3.1.3-intel-2016b             ParaView/5.1.2-goolf-5.2.01-mpi        UDUNITS/2.2.20-intel-2016b    grace/5.1.25                ncview/2.1.7-intel-2016b
  GraphicsMagick/1.3.25-intel-2016b    ParaView/5.1.2-intel-2016b-mpi  (D)    gettext/0.19.8                libX11/1.6.3-intel-2016b
  OpenCV/3.1.0-intel-2016b             Tk/8.6.4-intel-2016b-no-X11            gnuplot/5.0.5-intel-2016b     motif/2.3.6

This list was created with the command: 

module avail

and will is not showing the hidden modules.

If you want to create a list of every available software on the cluster (even the hidden ones), on your own, you can do this by simply using the command: 

module spider

The available software is listed in the format: name, version

Retrieved from "https://wiki.hpcuser.uni-oldenburg.de/index.php?title=Installed_Application_Software_and_Libraries&oldid=3327"