Difference between revisions of "FSL 2016"
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The currently installed version is available | The currently installed version is available | ||
... on environment 'hpc-env/6.4'': | ... on environment 'hpc-env/6.4'': | ||
'''FSL/6.0.0-foss-2017b | '''FSL/6.0.0'''-foss-2017b | ||
... on environment 'hpc-env/8.3' | ... on environment 'hpc-env/8.3' | ||
'''FSL/6.0.3-foss-2019b-Python-3.7.4 | '''FSL/6.0.3'''-foss-2019b-Python-3.7.4 | ||
'''FSL/6.0.4-fosscuda-2019b-Python-3.7.4 | '''FSL/6.0.4'''-fosscuda-2019b-Python-3.7.4 | ||
'''FSL/6.0.4-fosscuda-2019b-Python-3.7.4-EDDY''' | '''FSL/6.0.4'''-fosscuda-2019b-Python-3.7.4-'''EDDY''' | ||
'''FSL/6.0.5.1'''-fosscuda-2019b | |||
'''FSL/6.0.6.2''' | |||
== Using FSL == | == Using FSL == | ||
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The module ''FSL/6.0.4-fosscuda-2019b-EDDY'' is similar to the ''6.0.4'' version, but comes with an additional tool which can be called with the command <tt>eddy_cuda</tt>. Without any additional arguments the tool will print the help output which explains the usage options. | The module '''FSL/6.0.4-fosscuda-2019b-EDDY''' is similar to the ''6.0.4'' version, but comes with an additional tool which can be called with the command <tt>eddy_cuda</tt> after loading the module. Without any additional arguments the tool will print the help output which explains the usage options. | ||
== Documentation == | == Documentation == | ||
For more information about FSL you can visit the [https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/ FSL wiki] | For more information about FSL you can visit the [https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/ FSL wiki] | ||
Latest revision as of 14:23, 2 March 2023
Introduction
FSL (FMRIB Software Library) is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.
Installed version
The currently installed version is available ... on environment 'hpc-env/6.4:
FSL/6.0.0-foss-2017b
... on environment 'hpc-env/8.3'
FSL/6.0.3-foss-2019b-Python-3.7.4 FSL/6.0.4-fosscuda-2019b-Python-3.7.4 FSL/6.0.4-fosscuda-2019b-Python-3.7.4-EDDY FSL/6.0.5.1-fosscuda-2019b FSL/6.0.6.2
Using FSL
If you want to find out more about FSL on the HPC Cluster, you can use the command
module spider FSL
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env/6.4 module load FSL
Always remember: this command is case sensitive!
The module FSL/6.0.4-fosscuda-2019b-EDDY is similar to the 6.0.4 version, but comes with an additional tool which can be called with the command eddy_cuda after loading the module. Without any additional arguments the tool will print the help output which explains the usage options.
Documentation
For more information about FSL you can visit the FSL wiki
