FSL 2016

Introduction

FSL (FMRIB Software Library) is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.

Installed version

The currently installed version is available ... on environment 'hpc-env/6.4:

FSL/6.0.0-foss-2017b

... on environment 'hpc-env/8.3'

FSL/6.0.3-foss-2019b-Python-3.7.4
FSL/6.0.4-fosscuda-2019b-Python-3.7.4
FSL/6.0.4-fosscuda-2019b-Python-3.7.4-EDDY
FSL/6.0.5.1-fosscuda-2019b

Using FSL

If you want to find out more about FSL on the HPC Cluster, you can use the command

module spider FSL

This will show you basic informations e.g. a short description and the currently installed version.

To load the desired version of the module, use the command, e.g.

module load hpc-env/6.4
module load FSL

Always remember: this command is case sensitive!

The module FSL/6.0.4-fosscuda-2019b-EDDY is similar to the 6.0.4 version, but comes with an additional tool which can be called with the command eddy_cuda after loading the module. Without any additional arguments the tool will print the help output which explains the usage options.

Documentation

For more information about FSL you can visit the FSL wiki