Difference between revisions of "ConnectomeWorkbench 2016"
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== Introduction == | == Introduction == | ||
Connectome Workbench is an open source, freely available visualization and discovery tool used to map neuroimaging data, especially data generated by the Human Connectome Project. The distribution includes wb_view, a GUI-based visualiation platform, and wb_command, a command-line program for performing a variety of algorithmic tasks using volume, surface, and grayordinate data. wb_command is necessary for running HCP data processing pipelines. [https://www.humanconnectome.org/software/connectome-workbench ¹] | |||
== Installed version(s) == | == Installed version(s) == | ||
| Line 5: | Line 7: | ||
This version is installed and currently available on environment ''hpc-env/8.3'': | This version is installed and currently available on environment ''hpc-env/8.3'': | ||
<nowiki> | <nowiki> | ||
ConnectomeWorkbench/1.3.2-GCCcore-8.3.0 | '''ConnectomeWorkbench/1.3.2'''-GCCcore-8.3.0 | ||
'''ConnectomeWorkbench/1.5.0'''-GCCcore-8.3.0 | |||
</nowiki> | </nowiki> | ||
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To load the desired version of the module, use the command, e.g. | To load the desired version of the module, use the command, e.g. | ||
module load hpc-env | module load hpc-env 8.3 | ||
module load ConnectomeWorkbench | module load ConnectomeWorkbench | ||
| Line 23: | Line 26: | ||
wb_view | wb_view | ||
Without any command, each of them will give you a short | Without any command, each of them will give you a short description on how to use them. | ||
If you want to find out more about ConnectomeWorkbenchon the HPC cluster, you can use the command | If you want to find out more about ConnectomeWorkbenchon the HPC cluster, you can use the command | ||
| Line 30: | Line 33: | ||
This will show you basic information e.g. a short description and the currently installed version. | This will show you basic information e.g. a short description and the currently installed version. | ||
== Documentation == | == Documentation == | ||
The full documentation can be | The full documentation can be downloaded as pdf [https://www.humanconnectome.org/software/get-connectome-workbench here]. | ||
Latest revision as of 09:47, 29 November 2022
Introduction
Connectome Workbench is an open source, freely available visualization and discovery tool used to map neuroimaging data, especially data generated by the Human Connectome Project. The distribution includes wb_view, a GUI-based visualiation platform, and wb_command, a command-line program for performing a variety of algorithmic tasks using volume, surface, and grayordinate data. wb_command is necessary for running HCP data processing pipelines. ¹
Installed version(s)
This version is installed and currently available on environment hpc-env/8.3:
'''ConnectomeWorkbench/1.3.2'''-GCCcore-8.3.0 '''ConnectomeWorkbench/1.5.0'''-GCCcore-8.3.0
Using ConnectomeWorkbench
To load the desired version of the module, use the command, e.g.
module load hpc-env 8.3 module load ConnectomeWorkbench
Always remember: this command is case sensitive!
After Loading the Module, you have three applications available, which you can use by just typing them into the console:
wb_command wb_shortcuts wb_view
Without any command, each of them will give you a short description on how to use them.
If you want to find out more about ConnectomeWorkbenchon the HPC cluster, you can use the command
module spider ConnectomeWorkbench
This will show you basic information e.g. a short description and the currently installed version.
Documentation
The full documentation can be downloaded as pdf here.
