Difference between revisions of "AIMAll 2016"
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*'''AIMAll/19.10.12'''-intel-2019b-linux_64bit | *'''AIMAll/19.10.12'''-intel-2019b-linux_64bit | ||
== Loading | == Loading AIMAll == | ||
To load the desired version of the module, use the ''module load'' command, e.g. | To load the desired version of the module, use the ''module load'' command, e.g. | ||
Line 17: | Line 17: | ||
Always remember: this commands are case sensitive! | Always remember: this commands are case sensitive! | ||
== Using AIMAll == | |||
Although the installed AIMAll version on our cluster is pre-compiled on and for Linux, the softwares binaries (located at <tt>$EBROOTAIMALL/bin</tt> ) end with <tt>.exe</tt> suffixes. | Although the installed AIMAll version on our cluster is pre-compiled on and for Linux, the softwares binaries (located at <tt>$EBROOTAIMALL/bin</tt> ) end with <tt>.exe</tt> suffixes. | ||
To start the AIMAll GUI, type in <tt>aimstudio.ish</tt> or <tt>aimstudio.exe</tt> after loading the software module. Please note, that as with all GUI-based applications on our cluster, this only works with an X11 connection enabled (on Linux shells <tt>ssh -X</tt> or <tt>ssh -Y</tt>) | To start the AIMAll GUI, type in <tt>aimstudio.ish</tt> or <tt>aimstudio.exe</tt> after loading the software module. Please note, that as with all GUI-based applications on our cluster, this only works with an X11 connection enabled (on Linux shells <tt>ssh -X</tt> or <tt>ssh -Y</tt>) | ||
To find out on how to use AIMAll only with the command line, you can type in <tt>aimqb.ish -nogui -help</tt> after loading the module to print out a help text to get you started: | |||
<pre> | |||
$ aimqb.ish -nogui -help | |||
AIMAll Professional license check succeeded. | |||
AIMAll Professional features will be available. | |||
AIMQB (Version 19.10.12, Professional) | |||
Copyright (c) 1997-2019 by Todd A. Keith | |||
AIMQB is a component of the AIMAll package ( http://aim.tkgristmill.com ) | |||
Licensed To: University of Oldenburg, Prof. Thomas Mueller | |||
Command-line Usage: aimqb [options] [wfxfile | wfnfile | fchkfile] | |||
options: | |||
[-bim=auto/proaim/promega/promega1/promega5] (default is -bim=auto) | |||
[-iasmesh=sparse/medium/fine/veryfine/superfine] (default is -iasmesh=fine) | |||
[-capture=auto/basic/extended] (default is -capture=auto) | |||
[-boaq=auto/auto_gs2/auto_gs4/ | |||
gs1/gs2/gs3/gs4/gs5/gs6/gs7/gs8/gs9/gs10/gs15/ | |||
gs20/gs25/gs30/gs35/gs40/gs45/gs50/gs55/gs60/ | |||
leb23/leb25/leb27/leb29/leb31/leb32] (default is -boaq=auto) | |||
[-ehren=0/1/2] (default is -ehren=0) | |||
[-feynman=false/true] (default is -feynman=false) | |||
[-iasprops=false/true] (default is -iasprops=true) | |||
[-magprops=none/igaim/csgtb/giao] (default is -magprops=none) | |||
[-source=false/true] (default is -source=false) | |||
[-iaswrite=false/true] (default is -iaswrite=false) | |||
[-atidsprops=no/0.001/all] (default is -atidsprops=0.001) | |||
[-encomp=0/1/2/3/4] (default is -encomp=1) | |||
[-warn=false/true] (default is -warn=true) | |||
[-scp=false/true/some] (default is -scp=some) | |||
[-delmog=false/true] (default is -delmog=true) | |||
[-skipint=false/true] (default is -skipint=false) | |||
[-f2w=wfx/wfn] (default is -f2w=wfx) | |||
[-f2wonly=false/true] (default is -f2wonly=false) | |||
[-atoms=all] [-atoms=all_...] [-atoms=...] (default is -atoms=all) | |||
[-mir=auto/10.0/12.0/13.5/etc.] (default is -mir=auto) | |||
[-cpconn=moderate/complex/simple/basic] (default is -cpconn=moderate) | |||
[-intveeaa=old/new] (default is -intveeaa=new) | |||
[-atlaprhocps=false/true] (default is -atlaprhocps=false) | |||
[-wsp=false/true] (default is -wsp=true) | |||
[-nproc=1/2/3/etc.] (default is -nproc=1) | |||
[-naat=1/2/3/etc.] (default is -naat=1) | |||
[-shm_lmax=-1/0/1/2/etc.] (default is -shm_lmax=5) | |||
[-maxmem=800/1200/1800/2400/etc.] (default is -maxmem=800 for 32-bit) | |||
(default is -maxmem=2400 for 64-bit) | |||
[-verifyw=yes/no/only] (default is -verifyw=yes) | |||
[-saw=false/true] (default is -saw=false) | |||
[-autonnacps=false/true] (default is -autonnacps=true) | |||
[-help] | |||
[-console] | |||
[-newconsole] | |||
[-run] | |||
[-nogui] | |||
</pre> | |||
== Documentation == | == Documentation == | ||
The full documentation can be found [http://aim.tkgristmill.com/readme.html here]. | The full documentation can be found [http://aim.tkgristmill.com/readme.html here]. |
Revision as of 11:55, 1 February 2022
== Introduction ==AIMAll is a software package for performing quantitative and visual QTAIM (Quantum Theory of Atoms in Molecules) analyses of molecular systems - starting from molecular wavefunction data. 1
Installed version(s)
The following versions are installed and currently available...
... on environment hpc-env/8.3:
- AIMAll/19.10.12-intel-2019b-linux_64bit
Loading AIMAll
To load the desired version of the module, use the module load command, e.g.
module load hpc-env/8.3 module load AIMAll
Always remember: this commands are case sensitive!
Using AIMAll
Although the installed AIMAll version on our cluster is pre-compiled on and for Linux, the softwares binaries (located at $EBROOTAIMALL/bin ) end with .exe suffixes. To start the AIMAll GUI, type in aimstudio.ish or aimstudio.exe after loading the software module. Please note, that as with all GUI-based applications on our cluster, this only works with an X11 connection enabled (on Linux shells ssh -X or ssh -Y)
To find out on how to use AIMAll only with the command line, you can type in aimqb.ish -nogui -help after loading the module to print out a help text to get you started:
$ aimqb.ish -nogui -help AIMAll Professional license check succeeded. AIMAll Professional features will be available. AIMQB (Version 19.10.12, Professional) Copyright (c) 1997-2019 by Todd A. Keith AIMQB is a component of the AIMAll package ( http://aim.tkgristmill.com ) Licensed To: University of Oldenburg, Prof. Thomas Mueller Command-line Usage: aimqb [options] [wfxfile | wfnfile | fchkfile] options: [-bim=auto/proaim/promega/promega1/promega5] (default is -bim=auto) [-iasmesh=sparse/medium/fine/veryfine/superfine] (default is -iasmesh=fine) [-capture=auto/basic/extended] (default is -capture=auto) [-boaq=auto/auto_gs2/auto_gs4/ gs1/gs2/gs3/gs4/gs5/gs6/gs7/gs8/gs9/gs10/gs15/ gs20/gs25/gs30/gs35/gs40/gs45/gs50/gs55/gs60/ leb23/leb25/leb27/leb29/leb31/leb32] (default is -boaq=auto) [-ehren=0/1/2] (default is -ehren=0) [-feynman=false/true] (default is -feynman=false) [-iasprops=false/true] (default is -iasprops=true) [-magprops=none/igaim/csgtb/giao] (default is -magprops=none) [-source=false/true] (default is -source=false) [-iaswrite=false/true] (default is -iaswrite=false) [-atidsprops=no/0.001/all] (default is -atidsprops=0.001) [-encomp=0/1/2/3/4] (default is -encomp=1) [-warn=false/true] (default is -warn=true) [-scp=false/true/some] (default is -scp=some) [-delmog=false/true] (default is -delmog=true) [-skipint=false/true] (default is -skipint=false) [-f2w=wfx/wfn] (default is -f2w=wfx) [-f2wonly=false/true] (default is -f2wonly=false) [-atoms=all] [-atoms=all_...] [-atoms=...] (default is -atoms=all) [-mir=auto/10.0/12.0/13.5/etc.] (default is -mir=auto) [-cpconn=moderate/complex/simple/basic] (default is -cpconn=moderate) [-intveeaa=old/new] (default is -intveeaa=new) [-atlaprhocps=false/true] (default is -atlaprhocps=false) [-wsp=false/true] (default is -wsp=true) [-nproc=1/2/3/etc.] (default is -nproc=1) [-naat=1/2/3/etc.] (default is -naat=1) [-shm_lmax=-1/0/1/2/etc.] (default is -shm_lmax=5) [-maxmem=800/1200/1800/2400/etc.] (default is -maxmem=800 for 32-bit) (default is -maxmem=2400 for 64-bit) [-verifyw=yes/no/only] (default is -verifyw=yes) [-saw=false/true] (default is -saw=false) [-autonnacps=false/true] (default is -autonnacps=true) [-help] [-console] [-newconsole] [-run] [-nogui]
Documentation
The full documentation can be found here.