Difference between revisions of "BRAKER2 2016"
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==Installed Version == | ==Installed Version == | ||
'''BRAKER2/2.1.2''' Installed on hpc-env/6.4 | '''BRAKER2/2.1.2''' Installed on hpc-env/6.4 | ||
'''BRAKER2/2.1.4''' Installed on hpc-env/6.4 | |||
== Using BRAKER2 == | == Using BRAKER2 == | ||
In order to use BRAKER2 you primarily have to change into the newer environment: | In order to use BRAKER2 you primarily have to change into the newer environment: | ||
Revision as of 13:07, 11 November 2019
Introduction
BRAKER2 is a combination of GeneMark-ET and AUGUSTUS, that uses genomic and RNA-Seq data to automatically generate full gene structure annotations in novel genomes.
GeneMark and AUGUSTS are independently installed as dependencies for BRAKER2.
Installed Version
BRAKER2/2.1.2 Installed on hpc-env/6.4 BRAKER2/2.1.4 Installed on hpc-env/6.4
Using BRAKER2
In order to use BRAKER2 you primarily have to change into the newer environment:
module load hpc-env/6.4
module load BRAKER2
Please note that BRAKER2 runs with Python 3.7.0.
Documentation
To get a quick overview of the commands available for BRAKER2, just type braker.pl into the console after loading the module. You will then get a short summary of the commands for BRAKER2.
For further Information, visit the developers | website
