Difference between revisions of "Racon 2016"
Schwietzer (talk | contribs) (Created page with "== Introduction == Consensus module for raw de novo DNA assembly of long uncorrected reads. <br/> Racon is intended as a standalone consensus module to correct raw contigs gen...") |
Schwietzer (talk | contribs) m (→Documentation) |
||
| Line 27: | Line 27: | ||
== Documentation == | == Documentation == | ||
A short documentation can be found | A short documentation can be found on the [https://github.com/lbcb-sci/racon project page]. | ||
Latest revision as of 10:34, 21 October 2019
Introduction
Consensus module for raw de novo DNA assembly of long uncorrected reads.
Racon is intended as a standalone consensus module to correct raw contigs generated by rapid assembly methods which do not include a consensus step. The goal of Racon is to generate genomic consensus which is of similar or better quality compared to the output generated by assembly methods which employ both error correction and consensus steps, while providing a speedup of several times compared to those methods. It supports data produced by both Pacific Biosciences and Oxford Nanopore Technologies. ¹
Installed version(s)
This version is installed and currently available on environment hpc-env/6.4:
Racon/1.4.7-GCCcore-6.4.0
Using Racon
If you want to find out more about Racon on the HPC cluster, you can use the command
module spider Racon
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env 6.4 module load Racon
Always remember: this command is case sensitive!
To get an overview on how to use the program, you can use the help function after loading the module:
racon --help
Documentation
A short documentation can be found on the project page.
