Difference between revisions of "TopHat"
From HPC users
Jump to navigationJump to search
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
== Introduction == | == Introduction == | ||
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. | |||
== Installed version == | == Installed version == | ||
| Line 6: | Line 8: | ||
== Using TopHat on the HPC cluster == | == Using TopHat on the HPC cluster == | ||
If you want to use TopHat on the HPC Cluster, you will have to load its corresponding module first. You can do this with the command | |||
module load TopHat/2.1.1 | |||
== Documentation == | == Documentation == | ||
You can find the TopHat manual [https://ccb.jhu.edu/software/tophat/manual.shtml here]. | |||
Latest revision as of 06:19, 12 May 2017
Introduction
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
Installed version
The currently installed version of TopHat is 2.1.1.
Using TopHat on the HPC cluster
If you want to use TopHat on the HPC Cluster, you will have to load its corresponding module first. You can do this with the command
module load TopHat/2.1.1
Documentation
You can find the TopHat manual here.
