Difference between revisions of "Installed Application Software and Libraries"
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This page was created to give you an overview of the installed software on the cluster. The list will be updated once per week. | This page was created to give you an overview of the installed software on the cluster. The list will be updated once per week. | ||
/cm/local/modulefiles | '''/cm/local/modulefiles''' | ||
cluster-tools/7.3 cmd dot freeipmi/1.5.2 gcc/6.1.0 ipmitool/1.8.17 module-git module-info null openldap shared | cluster-tools/7.3 cmd dot freeipmi/1.5.2 gcc/6.1.0 ipmitool/1.8.17 module-git module-info null openldap shared | ||
/cm/shared/uniol/modules/core | '''/cm/shared/uniol/modules/core''' | ||
hpc-uniol-env (L) slurm/current (L) | hpc-uniol-env (L) slurm/current (L) | ||
/cm/shared/uniol/modules/bio | '''/cm/shared/uniol/modules/bio''' | ||
BCFtools/1.3.1 BLAST/2.6.0 (D) Beast/2.4.5 Bowtie/1.1.2 FASTX-Toolkit/0.0.14 IGVTools/2.3.75 NextGenMap/0.5.2 Stacks/1.42 ViennaRNA/2.3.1 cutadapt/1.9.1 | BCFtools/1.3.1 BLAST/2.6.0 (D) Beast/2.4.5 Bowtie/1.1.2 FASTX-Toolkit/0.0.14 IGVTools/2.3.75 NextGenMap/0.5.2 Stacks/1.42 ViennaRNA/2.3.1 cutadapt/1.9.1 | ||
BEDTools/2.26.0 BLAT/3.5 BioPerl/1.7.0 Bowtie2/2.2.9 FastQC/0.11.5 Lighter/1.0 SAMtools/1.3.1 Trinity/2.2.0 bcl2fastq2/2.18.0.12 | BEDTools/2.26.0 BLAT/3.5 BioPerl/1.7.0 Bowtie2/2.2.9 FastQC/0.11.5 Lighter/1.0 SAMtools/1.3.1 Trinity/2.2.0 bcl2fastq2/2.18.0.12 | ||
BLAST/2.2.26 BamTools/2.4.0 Biopython/1.68 CD-HIT/4.6.4 IGV/2.3.80 Lumpy/0.1 SOAPdenovo2/r240 VCFtools/0.1.14 bwa.kit/0.7.12 | BLAST/2.2.26 BamTools/2.4.0 Biopython/1.68 CD-HIT/4.6.4 IGV/2.3.80 Lumpy/0.1 SOAPdenovo2/r240 VCFtools/0.1.14 bwa.kit/0.7.12 | ||
/cm/shared/uniol/modules/cfd | '''/cm/shared/uniol/modules/cfd''' | ||
ESMF/7.0.0 OpenFOAM/2.1.1 OpenFOAM/3.0.1 OpenFOAM/4.1-se PALMDependencies/all WPS/3.7.1 WRF/3.6.1 WRF/3.8.1 (D) | ESMF/7.0.0 OpenFOAM/2.1.1 OpenFOAM/3.0.1 OpenFOAM/4.1-se PALMDependencies/all WPS/3.7.1 WRF/3.6.1 WRF/3.8.1 (D) | ||
GMT/5.3.1 OpenFOAM/2.3.1 OpenFOAM/4.0 OpenFOAM/4.1 (D) ThetaDependencies/all WPS/3.8.0 WRF/3.7.1 WRFGeodata/all | GMT/5.3.1 OpenFOAM/2.3.1 OpenFOAM/4.0 OpenFOAM/4.1 (D) ThetaDependencies/all WPS/3.8.0 WRF/3.7.1 WRFGeodata/all | ||
OpenFOAM/1.7.1 OpenFOAM/2.4.0 OpenFOAM/4.1-gcc OpenFOAM-Extend/3.2 WPS/3.6.1 WPS/3.8.1 (D) WRF/3.8.0 WRFGeodata/3.8 (D) | OpenFOAM/1.7.1 OpenFOAM/2.4.0 OpenFOAM/4.1-gcc OpenFOAM-Extend/3.2 WPS/3.6.1 WPS/3.8.1 (D) WRF/3.8.0 WRFGeodata/3.8 (D) | ||
/cm/shared/uniol/modules/chem | '''/cm/shared/uniol/modules/chem''' | ||
CP2K/3.0 ORCA/3.0.3 ORCA/4.0.0 (D) PLUMED/2.2.3 gaussian/g09.b01 gaussian/g09.d01 (D) | CP2K/3.0 ORCA/3.0.3 ORCA/4.0.0 (D) PLUMED/2.2.3 gaussian/g09.b01 gaussian/g09.d01 (D) | ||
/cm/shared/uniol/modules/compiler | '''/cm/shared/uniol/modules/compiler''' | ||
CUDA-Toolkit/8.0.44 GCC/5.4.0-2.26 LLVM/3.8.1-goolf-5.2.01 LLVM/3.9.0-intel-2016b (D) PGI/12.10 PGI/16.10 (D) ifort/2016.3.210 | CUDA-Toolkit/8.0.44 GCC/5.4.0-2.26 LLVM/3.8.1-goolf-5.2.01 LLVM/3.9.0-intel-2016b (D) PGI/12.10 PGI/16.10 (D) ifort/2016.3.210 | ||
GCC/4.9.4-2.25 GCC/6.2.0-2.27 (D) LLVM/3.8.1-intel-2016b NAG_Fortran/5.2 PGI/15.10 icc/2016.3.210 | GCC/4.9.4-2.25 GCC/6.2.0-2.27 (D) LLVM/3.8.1-intel-2016b NAG_Fortran/5.2 PGI/15.10 icc/2016.3.210 | ||
/cm/shared/uniol/modules/data | '''/cm/shared/uniol/modules/data''' | ||
CDO/1.7.2-intel-2016b HDF5/1.8.17-intel-2016b g2clib/1.4.0-intel-2016b grib_api/1.16.0-intel-2016b netCDF-Fortran/4.4.4-intel-2016b | CDO/1.7.2-intel-2016b HDF5/1.8.17-intel-2016b g2clib/1.4.0-intel-2016b grib_api/1.16.0-intel-2016b netCDF-Fortran/4.4.4-intel-2016b | ||
HDF/4.2.11-intel-2016b NCL/6.3.0-intel-2016b g2lib/1.4.0-intel-2016b netCDF/4.4.1-intel-2016b | HDF/4.2.11-intel-2016b NCL/6.3.0-intel-2016b g2lib/1.4.0-intel-2016b netCDF/4.4.1-intel-2016b | ||
/cm/shared/uniol/modules/devel | '''/cm/shared/uniol/modules/devel''' | ||
Autotools/20150215 CMake/2.8.12 CUDA-Visual-Profiler/8.0.44 Nvidia-Tesla-GDK/352.79 SQLite/3.9.2-intel-2016b Scalasca/2.3 xbitmaps/1.1.1 | Autotools/20150215 CMake/2.8.12 CUDA-Visual-Profiler/8.0.44 Nvidia-Tesla-GDK/352.79 SQLite/3.9.2-intel-2016b Scalasca/2.3 xbitmaps/1.1.1 | ||
Boost/1.61.0-goolf-5.2.01 CMake/3.6.2 (D) Cube/4.3.4 OTF2/2.0 SQLite/3.13.0-goolf-5.2.01 Valgrind/3.12.0 xorg-macros/1.19.0 | Boost/1.61.0-goolf-5.2.01 CMake/3.6.2 (D) Cube/4.3.4 OTF2/2.0 SQLite/3.13.0-goolf-5.2.01 Valgrind/3.12.0 xorg-macros/1.19.0 | ||
Boost/1.61.0-intel-2016b (D) CUDA-Profiler/8.0.44 M4/1.4.17 Qt/4.8.7-goolf-5.2.01 SQLite/3.13.0-intel-2016b (D) ncurses/6.0 | Boost/1.61.0-intel-2016b (D) CUDA-Profiler/8.0.44 M4/1.4.17 Qt/4.8.7-goolf-5.2.01 SQLite/3.13.0-intel-2016b (D) ncurses/6.0 | ||
/cm/shared/uniol/modules/lang | '''/cm/shared/uniol/modules/lang''' | ||
Anaconda3/4.3.0 Gurobi/7.0.2 Perl/5.20.3 Python/2.7.12 R/3.3.1 Tcl/8.6.4-intel-2016b nodejs/4.4.7-intel-2016b | Anaconda3/4.3.0 Gurobi/7.0.2 Perl/5.20.3 Python/2.7.12 R/3.3.1 Tcl/8.6.4-intel-2016b nodejs/4.4.7-intel-2016b | ||
Bison/3.0.4 Java/8.112 Python/2.7.11-intel-2016b Python/3.5.2 (D) ScientificPython/2.9.4-Python-2.7.12 (D) Yasm/1.3.0 | Bison/3.0.4 Java/8.112 Python/2.7.11-intel-2016b Python/3.5.2 (D) ScientificPython/2.9.4-Python-2.7.12 (D) Yasm/1.3.0 | ||
cm/shared/uniol/modules/lib | '''/cm/shared/uniol/modules/lib''' | ||
CFITSIO/3.410 CUDA-FFT/8.0.44 Xerces-C++/3.1.3 libtool/2.4.6 path.py/8.2.1-intel-2016b-Python-3.5.2 xforms/1.2.4 zoltan/3.83 | CFITSIO/3.410 CUDA-FFT/8.0.44 Xerces-C++/3.1.3 libtool/2.4.6 path.py/8.2.1-intel-2016b-Python-3.5.2 xforms/1.2.4 zoltan/3.83 | ||
CUDA-Blas/8.0.44 SIONlib/1.6.1 libpng/1.6.24 libxml2/2.9.4 testpath/0.3-intel-2016b-Python-3.5.2 zlib/1.2.8 | CUDA-Blas/8.0.44 SIONlib/1.6.1 libpng/1.6.24 libxml2/2.9.4 testpath/0.3-intel-2016b-Python-3.5.2 zlib/1.2.8 | ||
/cm/shared/uniol/modules/math | '''/cm/shared/uniol/modules/math''' | ||
GMP/6.1.0-intel-2016b | GMP/6.1.0-intel-2016b | ||
/cm/shared/uniol/modules/mpi | '''/cm/shared/uniol/modules/mpi''' | ||
OpenMPI/1.10.4-GCC-4.9.4 OpenMPI/2.0.1-GCC-5.4.0 OpenMPI/2.0.1-GCC-6.2.0 OpenMPI/2.0.2-GCC-5.4.0-2.26 (D) impi/5.1.3.210 | OpenMPI/1.10.4-GCC-4.9.4 OpenMPI/2.0.1-GCC-5.4.0 OpenMPI/2.0.1-GCC-6.2.0 OpenMPI/2.0.2-GCC-5.4.0-2.26 (D) impi/5.1.3.210 | ||
/cm/shared/uniol/modules/numlib | '''/cm/shared/uniol/modules/numlib''' | ||
ATLAS/3.10.2 FFTW/3.3.5-gompi-5.2.01 GSL/2.1 MATLAB/2016b Octave/4.0.3 ScaLAPACK/2.0.2 imkl/11.3.3.210 maple/2016 (D) | ATLAS/3.10.2 FFTW/3.3.5-gompi-5.2.01 GSL/2.1 MATLAB/2016b Octave/4.0.3 ScaLAPACK/2.0.2 imkl/11.3.3.210 maple/2016 (D) | ||
Armadillo/7.500.1 FIAT/1.6.0-intel-2016b-Python-2.7.12 Hypre/2.11.1 MPFR/3.1.4 OpenBLAS/0.2.19 SuiteSparse/4.5.3 leda/6.3 stata/13 | Armadillo/7.500.1 FIAT/1.6.0-intel-2016b-Python-2.7.12 Hypre/2.11.1 MPFR/3.1.4 OpenBLAS/0.2.19 SuiteSparse/4.5.3 leda/6.3 stata/13 | ||
Eigen/3.2.9 GMP/6.1.1 (D) LinBox/1.4.0 NTL/9.8.1 Qhull/2015.2 cuDNN/5.1-CUDA-8.0.44 maple/18 | Eigen/3.2.9 GMP/6.1.1 (D) LinBox/1.4.0 NTL/9.8.1 Qhull/2015.2 cuDNN/5.1-CUDA-8.0.44 maple/18 | ||
/cm/shared/uniol/modules/phys | '''/cm/shared/uniol/modules/phys''' | ||
EGSnrc/2017 Geant4/9.6.p04-intel-2016b Geant4/9.6.p04 Geant4/10.02.p01 (D) fluka/2011.2c | EGSnrc/2017 Geant4/9.6.p04-intel-2016b Geant4/9.6.p04 Geant4/10.02.p01 (D) fluka/2011.2c | ||
/cm/shared/uniol/modules/toolchain | '''/cm/shared/uniol/modules/toolchain''' | ||
foss/2016b gompi/4.1.10 gompi/5.2.01 gompi/6.2.01 (D) goolf/5.2.01 iimpi/2013b iimpi/2016b (D) intel/2013b intel/2016b (D) | foss/2016b gompi/4.1.10 gompi/5.2.01 gompi/6.2.01 (D) goolf/5.2.01 iimpi/2013b iimpi/2016b (D) intel/2013b intel/2016b (D) | ||
/cm/shared/uniol/modules/tools | '''/cm/shared/uniol/modules/tools''' | ||
EasyBuild/3.0.0 Ghostscript/9.19-intel-2016b NCO/4.6.0-intel-2016b XZ/5.2.2-intel-2016b configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7 tree/1.7.0 util-linux/2.29-intel-2016b | EasyBuild/3.0.0 Ghostscript/9.19-intel-2016b NCO/4.6.0-intel-2016b XZ/5.2.2-intel-2016b configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7 tree/1.7.0 util-linux/2.29-intel-2016b | ||
/cm/shared/uniol/modules/vis | '''/cm/shared/uniol/modules/vis''' | ||
FFmpeg/3.1.3-intel-2016b ParaView/5.1.2-goolf-5.2.01-mpi UDUNITS/2.2.20-intel-2016b grace/5.1.25 ncview/2.1.7-intel-2016b | FFmpeg/3.1.3-intel-2016b ParaView/5.1.2-goolf-5.2.01-mpi UDUNITS/2.2.20-intel-2016b grace/5.1.25 ncview/2.1.7-intel-2016b | ||
GraphicsMagick/1.3.25-intel-2016b ParaView/5.1.2-intel-2016b-mpi (D) gettext/0.19.8 libX11/1.6.3-intel-2016b | GraphicsMagick/1.3.25-intel-2016b ParaView/5.1.2-intel-2016b-mpi (D) gettext/0.19.8 libX11/1.6.3-intel-2016b | ||
Revision as of 14:08, 27 March 2017
Introduction
This page was created to give you an overview of the installed software on the cluster. The list will be updated once per week.
/cm/local/modulefiles
cluster-tools/7.3 cmd dot freeipmi/1.5.2 gcc/6.1.0 ipmitool/1.8.17 module-git module-info null openldap shared
/cm/shared/uniol/modules/core
hpc-uniol-env (L) slurm/current (L)
/cm/shared/uniol/modules/bio
BCFtools/1.3.1 BLAST/2.6.0 (D) Beast/2.4.5 Bowtie/1.1.2 FASTX-Toolkit/0.0.14 IGVTools/2.3.75 NextGenMap/0.5.2 Stacks/1.42 ViennaRNA/2.3.1 cutadapt/1.9.1 BEDTools/2.26.0 BLAT/3.5 BioPerl/1.7.0 Bowtie2/2.2.9 FastQC/0.11.5 Lighter/1.0 SAMtools/1.3.1 Trinity/2.2.0 bcl2fastq2/2.18.0.12 BLAST/2.2.26 BamTools/2.4.0 Biopython/1.68 CD-HIT/4.6.4 IGV/2.3.80 Lumpy/0.1 SOAPdenovo2/r240 VCFtools/0.1.14 bwa.kit/0.7.12
/cm/shared/uniol/modules/cfd
ESMF/7.0.0 OpenFOAM/2.1.1 OpenFOAM/3.0.1 OpenFOAM/4.1-se PALMDependencies/all WPS/3.7.1 WRF/3.6.1 WRF/3.8.1 (D) GMT/5.3.1 OpenFOAM/2.3.1 OpenFOAM/4.0 OpenFOAM/4.1 (D) ThetaDependencies/all WPS/3.8.0 WRF/3.7.1 WRFGeodata/all OpenFOAM/1.7.1 OpenFOAM/2.4.0 OpenFOAM/4.1-gcc OpenFOAM-Extend/3.2 WPS/3.6.1 WPS/3.8.1 (D) WRF/3.8.0 WRFGeodata/3.8 (D)
/cm/shared/uniol/modules/chem
CP2K/3.0 ORCA/3.0.3 ORCA/4.0.0 (D) PLUMED/2.2.3 gaussian/g09.b01 gaussian/g09.d01 (D)
/cm/shared/uniol/modules/compiler
CUDA-Toolkit/8.0.44 GCC/5.4.0-2.26 LLVM/3.8.1-goolf-5.2.01 LLVM/3.9.0-intel-2016b (D) PGI/12.10 PGI/16.10 (D) ifort/2016.3.210 GCC/4.9.4-2.25 GCC/6.2.0-2.27 (D) LLVM/3.8.1-intel-2016b NAG_Fortran/5.2 PGI/15.10 icc/2016.3.210
/cm/shared/uniol/modules/data
CDO/1.7.2-intel-2016b HDF5/1.8.17-intel-2016b g2clib/1.4.0-intel-2016b grib_api/1.16.0-intel-2016b netCDF-Fortran/4.4.4-intel-2016b HDF/4.2.11-intel-2016b NCL/6.3.0-intel-2016b g2lib/1.4.0-intel-2016b netCDF/4.4.1-intel-2016b
/cm/shared/uniol/modules/devel
Autotools/20150215 CMake/2.8.12 CUDA-Visual-Profiler/8.0.44 Nvidia-Tesla-GDK/352.79 SQLite/3.9.2-intel-2016b Scalasca/2.3 xbitmaps/1.1.1 Boost/1.61.0-goolf-5.2.01 CMake/3.6.2 (D) Cube/4.3.4 OTF2/2.0 SQLite/3.13.0-goolf-5.2.01 Valgrind/3.12.0 xorg-macros/1.19.0 Boost/1.61.0-intel-2016b (D) CUDA-Profiler/8.0.44 M4/1.4.17 Qt/4.8.7-goolf-5.2.01 SQLite/3.13.0-intel-2016b (D) ncurses/6.0
/cm/shared/uniol/modules/lang
Anaconda3/4.3.0 Gurobi/7.0.2 Perl/5.20.3 Python/2.7.12 R/3.3.1 Tcl/8.6.4-intel-2016b nodejs/4.4.7-intel-2016b Bison/3.0.4 Java/8.112 Python/2.7.11-intel-2016b Python/3.5.2 (D) ScientificPython/2.9.4-Python-2.7.12 (D) Yasm/1.3.0
/cm/shared/uniol/modules/lib
CFITSIO/3.410 CUDA-FFT/8.0.44 Xerces-C++/3.1.3 libtool/2.4.6 path.py/8.2.1-intel-2016b-Python-3.5.2 xforms/1.2.4 zoltan/3.83 CUDA-Blas/8.0.44 SIONlib/1.6.1 libpng/1.6.24 libxml2/2.9.4 testpath/0.3-intel-2016b-Python-3.5.2 zlib/1.2.8
/cm/shared/uniol/modules/math
GMP/6.1.0-intel-2016b
/cm/shared/uniol/modules/mpi
OpenMPI/1.10.4-GCC-4.9.4 OpenMPI/2.0.1-GCC-5.4.0 OpenMPI/2.0.1-GCC-6.2.0 OpenMPI/2.0.2-GCC-5.4.0-2.26 (D) impi/5.1.3.210
/cm/shared/uniol/modules/numlib
ATLAS/3.10.2 FFTW/3.3.5-gompi-5.2.01 GSL/2.1 MATLAB/2016b Octave/4.0.3 ScaLAPACK/2.0.2 imkl/11.3.3.210 maple/2016 (D) Armadillo/7.500.1 FIAT/1.6.0-intel-2016b-Python-2.7.12 Hypre/2.11.1 MPFR/3.1.4 OpenBLAS/0.2.19 SuiteSparse/4.5.3 leda/6.3 stata/13 Eigen/3.2.9 GMP/6.1.1 (D) LinBox/1.4.0 NTL/9.8.1 Qhull/2015.2 cuDNN/5.1-CUDA-8.0.44 maple/18
/cm/shared/uniol/modules/phys
EGSnrc/2017 Geant4/9.6.p04-intel-2016b Geant4/9.6.p04 Geant4/10.02.p01 (D) fluka/2011.2c
/cm/shared/uniol/modules/toolchain
foss/2016b gompi/4.1.10 gompi/5.2.01 gompi/6.2.01 (D) goolf/5.2.01 iimpi/2013b iimpi/2016b (D) intel/2013b intel/2016b (D)
/cm/shared/uniol/modules/tools
EasyBuild/3.0.0 Ghostscript/9.19-intel-2016b NCO/4.6.0-intel-2016b XZ/5.2.2-intel-2016b configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7 tree/1.7.0 util-linux/2.29-intel-2016b
/cm/shared/uniol/modules/vis
FFmpeg/3.1.3-intel-2016b ParaView/5.1.2-goolf-5.2.01-mpi UDUNITS/2.2.20-intel-2016b grace/5.1.25 ncview/2.1.7-intel-2016b GraphicsMagick/1.3.25-intel-2016b ParaView/5.1.2-intel-2016b-mpi (D) gettext/0.19.8 libX11/1.6.3-intel-2016b OpenCV/3.1.0-intel-2016b Tk/8.6.4-intel-2016b-no-X11 gnuplot/5.0.5-intel-2016b motif/2.3.6
This list was created with the command:
module avail
and will is not showing the hidden modules.
If you want to create a list of every available software on the cluster (even the hidden ones), on your own, you can do this by simply using the command:
module spider
The available software is listed in the format: name, version
