Difference between revisions of "BamTools"
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| Line 7: | Line 7: | ||
The currently installed version is 2.4.0. | The currently installed version is 2.4.0. | ||
== Using | == Using BamTools with the HPC Cluster == | ||
If you want to find out more about BEDtools on the HPC Cluster, you can use the command | If you want to find out more about BEDtools on the HPC Cluster, you can use the command | ||
module spider | module spider bamtools | ||
This will show you basic informations e.g. a short description and the currently installed version. | This will show you basic informations e.g. a short description and the currently installed version. | ||
| Line 17: | Line 17: | ||
To load the desired version of the module, use the command | To load the desired version of the module, use the command | ||
module load | module load BamTools/2.4.0-intel-2016b | ||
Always remember: this command is case sensitive! | Always remember: this command is case sensitive! | ||
| Line 23: | Line 23: | ||
After loading the module, you can use the program with | After loading the module, you can use the program with | ||
bamtools <COMMAND> [ARGS] | |||
== Documentation == | == Documentation == | ||
Further Information can be found on the [https://github.com/pezmaster31/bamtools project website]. | Further Information can be found on the [https://github.com/pezmaster31/bamtools project website]. | ||
Revision as of 10:44, 17 January 2017
Introduction
BamTools provides a small, but powerful suite of command-line utility programs for manipulating and querying BAM files for data.
Installed version
The currently installed version is 2.4.0.
Using BamTools with the HPC Cluster
If you want to find out more about BEDtools on the HPC Cluster, you can use the command
module spider bamtools
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command
module load BamTools/2.4.0-intel-2016b
Always remember: this command is case sensitive!
After loading the module, you can use the program with
bamtools <COMMAND> [ARGS]
Documentation
Further Information can be found on the project website.
