View source for Exonerate 2016

== Introduction ==
Exonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, either exhaustive dynamic programming or a variety of heuristics.


== Installed versions ==
Exonerate is installed on the environment ''hpc-env/6.4'' in the following versions:
 Exonerate/2.4.0-foss-2017b
 Exonerate/2.4.0-intel-2018a



== Using Exonerate on the HPC cluster==
To use Exonerate, you have to load the corresponding environment first and then load the version with the desired toolchain (foss/intel):
 module load hpc-env/6.4
 module-load Exonerate/2.4.0-intel-2018

== Documentation ==

If you want an introduction to the available commands, you can use the help function after loading the module.
Just type in:
 exonerate --help
Here Exonerate offers a very detailed list and description of the available commands. 

Additional information about Exonerate can either be found in the [https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate-user-guide user guide] or in the [https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate-manual manual].