View source for Welcome to the HPC User Wiki of the University of Oldenburg

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| ''This is the HPC-Wiki of the University of Oldenburg''<br>
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= Basic Information =
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! HPC Facilities
! Login
! User environment
! Compiling and linking
! Job Management (Queueing) System
! Altix UV 100 system
! Examples
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* [[HPC Facilities of the University of Oldenburg| Overview]]
* [[HPC Facilities of the University of Oldenburg#FLOW| FLOW]]
* [[HPC Facilities of the University of Oldenburg#HERO| HERO]]
* [[HPC Policies| HPC Policies]]
* [[Unix groups| Groups ]]
* [[Acknowledging_the_HPC_facilities| Acknowledging FLOW/HERO]]
* [[User Meetings]]
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* [[Logging in to the system#From within the University (intranet) | From University]]
* [[Logging in to the system#From outside the University (internet) | From Home]]
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* [[User environment - The usage of module| Usage of module]]
* [[File system| File System / Quotas]]
* [[Mounting Directories of FLOW and HERO#Windows | Shares under Windows]]
* [[Mounting Directories of FLOW and HERO#Linux | Shares under Linux]]
* [[License servers]]
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* [[Compiling and linking|Basics]]
* [[GNU Compiler]]
* [[Intel Compiler]]
* [[PGI Compiler]]
* [[Open64 Compiler]]
* [[Using the Altix UV 100 system#Compiling and linking applications| Altix UV 100]]

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* [[SGE Job Management (Queueing) System| Overview]]
* [[SGE Job Management (Queueing) System#Submitting jobs| Submitting ]]
* [[SGE Job Management (Queueing) System#Specifying job requirements| Job requirements ]]
* [[SGE Job Management (Queueing) System#Parallel environments (PEs) | Parallel jobs ]]
* [[SGE Job Management (Queueing) System#Interactive jobs | Interactive jobs ]]
* [[SGE Job Management (Queueing) System#Monitoring and managing your jobs | Commands ]]
* [[SGE Job Management (Queueing) System#Array jobs| Job arrays  ]]
* [[SGE Job Management (Queueing) System#Environment variables | Environment variables]]
* [[Brief_Introduction_to_HPC_Computing#Checking_the_status_of_the_job | Checking the job status]] [[Brief_Introduction_to_HPC_Computing#Checking_the_status_of_the_job_2| (par. jobs)]]
* [[Brief_Introduction_to_HPC_Computing#Details_for_finished_jobs| Obtaining details for finished jobs]]
* [[SGE Job Management (Queueing) System#Documentation | Documentation]]
* [[Queues_and_resource_allocation| On Queues and resource allocation]]
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* [[Using the Altix UV 100 system#Compiling and linking applications| Compiling]]
* [[Using the Altix UV 100 system#Submitting SGE jobs| Submitting]]
* [[Using the Altix UV 100 system#Documentation| Documentation]]
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* [[Brief Introduction to HPC Computing| Brief Introduction to HPC Computing]]
* [[Matlab Examples using MDCS| Matlab examples using MDCS]]
* [[MDCS Basic Example]] (for R2014b and later)
* [[HPC Tutorial No1| HPC Tutorial 2013]]
* [[HPC Introduction October 6-8, 2014| HPC Tutorial 2014]]
* [[HPC Introduction October 7-9, 2015| HPC Tutorial 2015]]
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= Application Software and Libraries =

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!Compiler and Development Tools
!Quantum Chemistry
!Computational Fluid Dynamics
!Mathematics/Scripting
!Visualisation
!Libraries
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* [[debugging]]
* [[git]]
* [[GNU Compiler]]
* [[Intel Compiler]]
* [[Open64 Compiler]]
* [[PGI Compiler]]
* [[Profiling_using_gprof| profiling]]
* [[scalasca]]
* [[subversion (svn)]]
* [[valgrind]]

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* [[Gaussian 09]]
* [[MOLCAS]]
* [[MOLPRO]]
* [[NBO]]
* [[ORCA]]
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* [[Ansys]]
* [[FOAMpro]]
* [[Nektar++]]
* [[Nek 5000]]
* [[OpenFOAM]]
* [[PALM]]
* [[STAR-CCM++]]
* [[THETA]]
* [[WRF/WPS]]

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* [[Configuration MDCS]] (2014b and later) 
* [[MATLAB Distributing Computing Server]]
* [[Python]]
* [[R]]
* [[STATA| STATA]]
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* [[iso99]]
* [[NCL]]
* [[ncview]]
* [[paraview]]
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* [[BLAS and LAPACK]]
* [[EGSnrc]]
* [[FLUKA]]
* [[GEANT4]]
* [[Gurobi]]
* [[HDF5]]
* [[Intel MPI]]
* [[LEDA]]
* [[NetCDF]]
* [[OpenMPI]]

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= Courses and Tutorials =

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!Introduction to HPC Courses
!Matlab Tutorials
!New OS
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* [[HPC Introduction October 6-8, 2014]]
* [[HPC Introduction October 7-9, 2015]]
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* [[Audio Data Processing]]
* [[Using the MEX Compiler]]
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* [[media:New_OS_On_FLOW.pdf | New OS on FLOW ]]
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= Contact =

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!HPC Resource
!EMail
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FLOW and HERO<br>
Both (in case of vacation)<br>
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Stefan.Harfst@uni-oldenburg.de<br>
hpcuniol@uni-oldenburg.de<br>
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'''''Note:''' This Wiki is under construction and a preliminary version! Contributions are welcome. Please ask Stefan Harfst (Stefan.Harfst(at)uni-oldenburg.de) for further informations.''

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''Only for editors: [[Formatting rules for this Wiki]]''
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[[HPC User Wiki 2016]]