Difference between revisions of "HPC User Wiki 2016"

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''Not directly administered by our University:''
''Other HPC resources:''
* [[HPC Facilities of the University of Oldenburg 2016#GOLD| GOLD]]
* [[HPC Facilities of the University of Oldenburg 2016#GOLD| GOLD]]
* [[ HLRN 2016 | HLRN ]]
* [[ HLRN 2016 | HLRN ]]
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*[[Burrows-Wheeler Aligner]]
*[[Burrows-Wheeler Aligner]]
*[[canu 2016 | canu]]
*[[canu 2016 | canu]]
*[[cdbfasta 2016 | cdbfasta]]
*[[CD-HIT]]
*[[CD-HIT]]
*[[CellRanger 2016 | CellRanger]]
*[[CellRanger 2016 | CellRanger]]
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*[[GATK]]
*[[GATK]]
*[[GATE 2016 | GATE]]
*[[GATE 2016 | GATE]]
*[[GenomeThreader 2016 | GenomeThreader]]
*[[GeneMark-EX 2016 | GeneMark-EX]]
*[[GeneMark-EX 2016 | GeneMark-EX]]
*[[GenomeTools 2016 | GenomeTools]]
*[[GenomeTools 2016 | GenomeTools]]
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*[[Sickle 2016 | Sickle]]
*[[Sickle 2016 | Sickle]]
*[[SPAdes 2016 | SPAdes]]
*[[SPAdes 2016 | SPAdes]]
*[[spaln 2016 | spaln]]
*[[Mindboggle 2016 | Mindboggle]]
*[[Mindboggle 2016 | Mindboggle]]
*[[SNAP 2016 | SNAP]]
*[[SNAP 2016 | SNAP]]
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|
|
* [[BLAS and LAPACK 2016 | BLAS and LAPACK]]
* [[BLAS and LAPACK 2016 | BLAS and LAPACK]]
* [[FLAC 2016 | FLAC]] 
* [[libsamplerate 2016 | libsamplerate]]
* [[MariaDB 2016 | MariaDB]]
* [[MariaDB 2016 | MariaDB]]
* [[PyTables 2016 | PyTables]]
* [[PyTables 2016 | PyTables]]
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* [[ElmerFEM 2016 | ElmerFEM]]
* [[ElmerFEM 2016 | ElmerFEM]]
* [[FLUKA 2016 | FLUKA]]
* [[FLUKA 2016 | FLUKA]]
* [[fluka.cern | fluka.cern]]
* [[FDTD_Solutions / Lumerical 2016 | FDTD Solutions / Lumerical]]
* [[FDTD_Solutions / Lumerical 2016 | FDTD Solutions / Lumerical]]
* [[GEANT4 2016| GEANT4]]
* [[GEANT4 2016| GEANT4]]
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* [[HDF5 2016 | HDF5]]
* [[HDF5 2016 | HDF5]]
* [[LEDA  2016 | LEDA]]
* [[LEDA  2016 | LEDA]]
* [[mumax 2016 | mumax]]
* [[NetCDF 2016 | NetCDF]]
* [[NetCDF 2016 | NetCDF]]
* [[Octopus 2016 | Octopus ]]
* [[Octopus 2016 | Octopus ]]
* [[PVMOS 2016 | PVMOS]]
* [[PVMOS 2016 | PVMOS]]
* [[SCUFF-EM 2016 | SCUFF-EM]]
* [[SCUFF-EM 2016 | SCUFF-EM]]
* [[libsamplerate 2016 | sndfile-tools]]
* [[VASP 2016 | VASP]]
* [[VASP 2016 | VASP]]
** [[p4vasp 2016 | p4vasp]]
** [[p4vasp 2016 | p4vasp]]
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</center>
</center>
The old wiki for HERO and FLOW is found [[Welcome to the HPC User Wiki of the University of Oldenburg | here]].<br><br>
The old wiki for HERO and FLOW is found [[Welcome to the HPC User Wiki of the University of Oldenburg | here]].<br><br>
<span style="color: green">[[HPC Support Internal]]</span> <br><br>
<span style="color: green">[[HPC Support Internal]]</span> <br>
[[Intel CPU Bug]]<br>
[[Globus Data Transfer]]
[[Globus Data Transfer]]

Revision as of 12:43, 6 May 2022

Documentation for High-Performance Computing at the University Oldenburg

This is the HPC User Wiki for the HPC clusters CARL and EDDY. If you would like to contribute please contact Scientific Computing!

General Information


---------------- FAQ - Frequently Asked Questions ---------------- 
 ------------- Want to stay in contact with the HPC support and other users? Join our Mattermost group! -------------
------------------ Tired of reading long wiki articles? ------------------ 
------------- Check out our new HPC Video Lectures! -------------
HPC Facilities Quickstart Guide User environment Job Management (Queueing) System


Other HPC resources:

Application Software and Libraries

----------------------  What's installed and what's new? ----------------------
Compiler and Development Tools Quantum Chemistry Biology & Medicine Mathematics, Statistics & Scripting
Libraries Physics Machine Learning Computational Fluid Dynamics Visualisation

Courses and Tutorials

Below you can find a list of Courses and Tutorials for our HPC clusters. Currently, a short, two-hour introduction for the new clusters CARL and EDDY is planned. During the summer semester a lecture "Introduction to HPC" is held (2h/week). If you are interested in attending or would like to request a course please contact Scientific Computing.

Courses and Workshops Lectures Tutorials

Contact

In case you need HPC support you can use the contacts listed below. The servicedesk of IT services can be contacted for all questions regarding HPC, and are recommended in particular when someone is absent (e.g. due to a vacation).

HPC Resource Name E-Mail
CARL and EDDY General HPC Support
and Servicedesk
hpcsupport@uni-oldenburg.de
servicedesk@uni-oldenburg.de
CARL Stefan Harfst
Fynn Schwietzer
stefan.harfst@uni-oldenburg.de
fynn.schwietzer1@uni-oldenburg.de
EDDY Wilke Trei wilke.trei@forwind.de

The old wiki for HERO and FLOW is found here.

HPC Support Internal
Intel CPU Bug
Globus Data Transfer