Gffread 2016

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gffread is a GFF/GTF parsing utility which provides format conversions, region filtering, FASTA sequence extraction and more.

Installed version

The currently installed version is available on the environment hpc-env/6.4:


Using gffread

If you want to find out more about gffread on the HPC Cluster, you can use the command

module spider gffread

This will show you basic informations e.g. a short description and the currently installed version.

To load the desired version of the module, use the command, e.g.

module load hpc-env/6.4
module load gffread

Always remember: this command is case sensitive!

To get more information about how to specifically use the program, you can use the help funktion:

gffread --help


For more information about gffread as well as about GFF and GTF files, you can visit this site.